add dpends and fix ridge

BioArchLinux/r-bbotk/PKGBUILD

@@ -0,0 +1,43 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=bbotk
+_pkgver=0.5.3
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Black-Box Optimization Toolkit'
+arch=('x86_64')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-checkmate
+  r-data.table
+  r-lgr
+  r-mlr3misc
+  r-paradox
+  r-r6
+)
+optdepends=(
+  r-adagio
+  r-emoa
+  r-gensa
+  r-irace
+  r-knitr
+  r-nloptr
+  r-progressr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-bbotk/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-bbotk/lilac.yaml

@@ -0,0 +1,15 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+  email: starsareintherose@outlook.com
+repo_depends:
+- r-checkmate
+- r-data.table
+- r-lgr
+- r-mlr3misc
+- r-paradox
+- r-r6
+update_on:
+- regex: bbotk_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=bbotk

BioArchLinux/r-configr/PKGBUILD

@@ -0,0 +1,39 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=configr
+_pkgver=0.3.5
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML)'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-glue
+  r-ini
+  r-jsonlite
+  r-rcpptoml
+  r-stringr
+  r-yaml
+)
+optdepends=(
+  r-knitr
+  r-prettydoc
+  r-rmarkdown
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-configr/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-configr/lilac.yaml

@@ -0,0 +1,15 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+  email: starsareintherose@outlook.com
+repo_depends:
+- r-glue
+- r-ini
+- r-jsonlite
+- r-rcpptoml
+- r-stringr
+- r-yaml
+update_on:
+- regex: configr_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=configr

BioArchLinux/r-gggenes/PKGBUILD

@@ -0,0 +1,36 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=gggenes
+_pkgver=0.4.1
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc="Draw Gene Arrow Maps in 'ggplot2'"
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-ggfittext
+  r-ggplot2
+  r-rlang
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-spelling
+  r-testthat
+  r-vdiffr
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-gggenes/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-gggenes/lilac.yaml

@@ -0,0 +1,12 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+  email: starsareintherose@outlook.com
+repo_depends:
+- r-ggfittext
+- r-ggplot2
+- r-rlang
+update_on:
+- regex: gggenes_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=gggenes

BioArchLinux/r-ridge/PKGBUILD

@@ -12,6 +12,7 @@ url="https://cran.r-project.org/package=${_pkgname}"
 license=('GPL')
 depends=(
   r
+  gsl
 )
 optdepends=(
   r-covr