diff --git a/BioArchLinux/r-biochail/PKGBUILD b/BioArchLinux/r-biochail/PKGBUILD new file mode 100644 index 0000000000..ad0a836f9b --- /dev/null +++ b/BioArchLinux/r-biochail/PKGBUILD @@ -0,0 +1,38 @@ +# Maintainer: Pekka Ristola + +_pkgname=BiocHail +_pkgver=1.0.1 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="basilisk and hail" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(Artistic2.0) +depends=( + r-basilisk + r-biocfilecache + r-biocgenerics + r-dplyr + r-reticulate +) +optdepends=( + r-biocstyle + r-dt + r-ggplot2 + r-knitr + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('438d85e8e37b643fba225d1b4315f8d4') +sha256sums=('8fa73c0f281c26c65f4fcca3f0eb895dc03bab3a4b1e77ea0978e0494f84c7e2') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-biochail/lilac.py b/BioArchLinux/r-biochail/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-biochail/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-biochail/lilac.yaml b/BioArchLinux/r-biochail/lilac.yaml new file mode 100644 index 0000000000..6c580c671b --- /dev/null +++ b/BioArchLinux/r-biochail/lilac.yaml @@ -0,0 +1,16 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-basilisk +- r-biocfilecache +- r-biocgenerics +- r-dplyr +- r-reticulate +update_on: +- source: rpkgs + pkgname: BiocHail + repo: bioc + md5: true +- alias: r