From 66709f0304d88d97ad05dfa83cc6b104f4a4f7b5 Mon Sep 17 00:00:00 2001 From: Pekka Ristola Date: Mon, 4 Dec 2023 17:24:40 +0200 Subject: [PATCH] r-redisparam: init --- BioArchLinux/r-redisparam/PKGBUILD | 44 ++++++++++++++++++ BioArchLinux/r-redisparam/lilac.py | 17 +++++++ BioArchLinux/r-redisparam/lilac.yaml | 17 +++++++ BioArchLinux/r-redux/PKGBUILD | 44 ++++++++++++++++++ BioArchLinux/r-redux/lilac.py | 17 +++++++ BioArchLinux/r-redux/lilac.yaml | 20 +++++++++ BioArchLinux/r-storr/PKGBUILD | 67 ++++++++++++++++++++++++++++ BioArchLinux/r-storr/lilac.py | 14 ++++++ BioArchLinux/r-storr/lilac.yaml | 19 ++++++++ 9 files changed, 259 insertions(+) create mode 100644 BioArchLinux/r-redisparam/PKGBUILD create mode 100644 BioArchLinux/r-redisparam/lilac.py create mode 100644 BioArchLinux/r-redisparam/lilac.yaml create mode 100644 BioArchLinux/r-redux/PKGBUILD create mode 100644 BioArchLinux/r-redux/lilac.py create mode 100644 BioArchLinux/r-redux/lilac.yaml create mode 100644 BioArchLinux/r-storr/PKGBUILD create mode 100644 BioArchLinux/r-storr/lilac.py create mode 100644 BioArchLinux/r-storr/lilac.yaml diff --git a/BioArchLinux/r-redisparam/PKGBUILD b/BioArchLinux/r-redisparam/PKGBUILD new file mode 100644 index 0000000000..0ef10cacf7 --- /dev/null +++ b/BioArchLinux/r-redisparam/PKGBUILD @@ -0,0 +1,44 @@ +# Maintainer: Pekka Ristola + +_pkgname=RedisParam +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Provide a 'redis' back-end for BiocParallel" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(Artistic2.0) +depends=( + r-biocparallel + r-futile.logger + r-redux + r-withr +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('cf24018f96bc9de6286d2806dfd7bfaa') +sha256sums=('5ec7a73f0109edf45a41a8922246a6ff183f0fce305156101b56725ab4132041') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-redisparam/lilac.py b/BioArchLinux/r-redisparam/lilac.py new file mode 100644 index 0000000000..0985d908e1 --- /dev/null +++ b/BioArchLinux/r-redisparam/lilac.py @@ -0,0 +1,17 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build( + _G, + expect_systemrequirements = "hiredis", + ) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-redisparam/lilac.yaml b/BioArchLinux/r-redisparam/lilac.yaml new file mode 100644 index 0000000000..1235936ff9 --- /dev/null +++ b/BioArchLinux/r-redisparam/lilac.yaml @@ -0,0 +1,17 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-biocparallel +- r-futile.logger +- r-redux +- r-withr +repo_makedepends: +- r-testthat +update_on: +- source: rpkgs + pkgname: RedisParam + repo: bioc + md5: true +- alias: r diff --git a/BioArchLinux/r-redux/PKGBUILD b/BioArchLinux/r-redux/PKGBUILD new file mode 100644 index 0000000000..550658f5d3 --- /dev/null +++ b/BioArchLinux/r-redux/PKGBUILD @@ -0,0 +1,44 @@ +# Maintainer: Pekka Ristola + +_pkgname=redux +_pkgver=1.1.4 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="R Bindings to 'hiredis'" +arch=(x86_64) +url="https://cran.r-project.org/package=${_pkgname}" +license=(GPL2) +depends=( + hiredis + r-r6 + r-storr +) +checkdepends=( + r-sys + r-testthat +) +optdepends=( + r-knitr + r-rmarkdown + r-sys + r-testthat +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('13eb2a35ff97ad02e09b1e42ec8cff7c') +sha256sums=('201d7c89840f3d698fe94ec3fe4088a19c2a9dc19ee7ec300d5deeadd2606fb1') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-redux/lilac.py b/BioArchLinux/r-redux/lilac.py new file mode 100644 index 0000000000..0985d908e1 --- /dev/null +++ b/BioArchLinux/r-redux/lilac.py @@ -0,0 +1,17 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build( + _G, + expect_systemrequirements = "hiredis", + ) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-redux/lilac.yaml b/BioArchLinux/r-redux/lilac.yaml new file mode 100644 index 0000000000..fd726396d4 --- /dev/null +++ b/BioArchLinux/r-redux/lilac.yaml @@ -0,0 +1,20 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-r6 +- r-storr +repo_makedepends: +- r-sys +- r-testthat +update_on: +- source: rpkgs + pkgname: redux + repo: cran + md5: true +- alias: r +- source: alpmfiles + pkgname: hiredis + filename: usr/lib/libhiredis\.so\.([^.]+\.[^.]+\.[^.]+) + repo: extra diff --git a/BioArchLinux/r-storr/PKGBUILD b/BioArchLinux/r-storr/PKGBUILD new file mode 100644 index 0000000000..4b1323901c --- /dev/null +++ b/BioArchLinux/r-storr/PKGBUILD @@ -0,0 +1,67 @@ +# Maintainer: Pekka Ristola + +_pkgname=storr +_pkgver=1.2.5 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Simple Key Value Stores" +arch=(x86_64) +url="https://cran.r-project.org/package=${_pkgname}" +license=(MIT) +depends=( + r-digest + r-r6 +) +checkdepends=( + postgresql + r-dbi + r-mockr + r-rpostgres + r-rsqlite + r-testthat +) +optdepends=( + r-dbi + r-knitr + r-mockr + r-progress + r-rbenchmark + r-rmarkdown + r-rpostgres + r-rsqlite + r-testthat +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('0bec8b9e53ad575bd9a20b68a798f853') +sha256sums=('4224c3991d9c043a45ce530d0698d7f2cdca231b26fe31b45e0db865026e5f63') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + + # create database for tests + export PGDATA="$srcdir/db" + export PGHOST="$srcdir/host" + mkdir "$PGHOST" + initdb + pg_ctl -o "-h '' -k ${PGHOST@Q}" start + createdb + + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R + + # shut down test database + pg_ctl stop +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} diff --git a/BioArchLinux/r-storr/lilac.py b/BioArchLinux/r-storr/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-storr/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-storr/lilac.yaml b/BioArchLinux/r-storr/lilac.yaml new file mode 100644 index 0000000000..bcacce81eb --- /dev/null +++ b/BioArchLinux/r-storr/lilac.yaml @@ -0,0 +1,19 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-digest +- r-r6 +repo_makedepends: +- r-dbi +- r-mockr +- r-rpostgres +- r-rsqlite +- r-testthat +update_on: +- source: rpkgs + pkgname: storr + repo: cran + md5: true +- alias: r