r-spam: fix depends, use metadata checks

BioArchLinux/r-spam/PKGBUILD

@@ -1,42 +1,62 @@
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 # Contributor: Robert Greener <me@r0bert.dev>
 # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 
 _pkgname=spam
-_pkgver=2.9-1
+_pkgver=2.10-0
 pkgname=r-${_pkgname,,}
-pkgver=2.9.1
+pkgver=${_pkgver//-/.}
-pkgrel=5
+pkgrel=0
-pkgdesc='SPArse Matrix'
+pkgdesc="SPArse Matrix"
-arch=('x86_64')
+arch=(x86_64)
 url="https://cran.r-project.org/package=${_pkgname}"
-license=('LGPL')
+license=(BSD)
 depends=(
-  r
+  blas
+  lapack
   r-dotcall64
+  r-rcpp
+)
+makedepends=(
+  gcc-fortran
+)
+checkdepends=(
+  r-testthat
 )
 optdepends=(
   r-fields
   r-knitr
-  r-matrix
   r-r.rsp
   r-rmarkdown
   r-spam64
   r-testthat
   r-truncdist
 )
-makedepends=(
-  gcc-fortran
-)
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('c32e219279988b1bfc258aaf64f5a46efa558202848a9ae64946ffbe8b497ddb')
+md5sums=('544bbc0a7ae76ef34ed01bf61c666f82')
+sha256sums=('719c86a23801ecf051ffd8291912ee3567af4010e74af470fbf09e274728ac79')
+
+prepare() {
+  # skip tests that require r-fields
+  sed -i "/require('fields')/i skip_if_not_installed('fields')" \
+      "$_pkgname/tests/testthat/test-rmvnorm.R"
+}
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-spam/lilac.py

@@ -1,12 +1,16 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(
-        if line.startswith('_pkgver='):
+        _G,
-            line = f'_pkgver={_G.newver}'
+        expect_license = "LGPL-2 | BSD_3_clause + file LICENSE",
-        print(line)
+    )
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-spam/lilac.yaml

@@ -1,11 +1,23 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: starsareintherose
+- github: pekkarr
-  email: kuoi@bioarchlinux.org
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-dotcall64
+- r-rcpp
+repo_makedepends:
+- r-testthat
 update_on:
-- regex: spam_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: spam
-  url: https://cran.r-project.org/package=spam
+  repo: cran
+  md5: true
 - alias: r
+- source: alpmfiles
+  pkgname: blas
+  filename: usr/lib/libblas\.so\.([^.]+)
+  repo: extra
+- source: alpmfiles
+  pkgname: lapack
+  filename: usr/lib/liblapack\.so\.([^.]+)
+  repo: extra