From 69246883faa2f616a2c12b8465de4bb2fef4020f Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Mon, 18 Sep 2023 18:29:51 +0300
Subject: [PATCH] r-prediction: init, dependency of r-margins, which is
 checkdependency of r-estimatr, which is checkdependency of r-performance

---
 BioArchLinux/r-prediction/PKGBUILD   | 67 ++++++++++++++++++++++++++++
 BioArchLinux/r-prediction/lilac.py   | 14 ++++++
 BioArchLinux/r-prediction/lilac.yaml | 40 +++++++++++++++++
 3 files changed, 121 insertions(+)
 create mode 100644 BioArchLinux/r-prediction/PKGBUILD
 create mode 100644 BioArchLinux/r-prediction/lilac.py
 create mode 100644 BioArchLinux/r-prediction/lilac.yaml

diff --git a/BioArchLinux/r-prediction/PKGBUILD b/BioArchLinux/r-prediction/PKGBUILD
new file mode 100644
index 0000000000..a78461fb5a
--- /dev/null
+++ b/BioArchLinux/r-prediction/PKGBUILD
@@ -0,0 +1,67 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=prediction
+_pkgver=0.3.14
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Tidy, Type-Safe 'prediction()' Methods"
+arch=(any)
+url="https://cran.r-project.org/package=${_pkgname}"
+license=(MIT)
+depends=(
+  r-data.table
+)
+checkdepends=(
+  r-aer
+  r-aod
+  r-betareg
+  r-biglm
+  r-brglm
+  r-caret
+  r-crch
+  r-e1071
+  r-earth
+  r-gam
+  r-gee
+  r-glmnet
+  r-glmx
+  r-kernlab
+  r-lme4
+  r-mclogit
+  r-mda
+  r-mnp
+  r-ordinal
+  r-plm
+  r-pscl
+  r-quantreg
+  r-sampleselection
+  r-speedglm
+  r-survey
+  r-testthat
+  r-truncreg
+)
+optdepends=(
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('f27a713e1265ac86ab47b06a32154e44')
+sha256sums=('3daf9f03c12f932817376361fecae62b8f74f5cce3f09096a84645d769c1942b')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat-prediction.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}
diff --git a/BioArchLinux/r-prediction/lilac.py b/BioArchLinux/r-prediction/lilac.py
new file mode 100644
index 0000000000..b5cdb057c5
--- /dev/null
+++ b/BioArchLinux/r-prediction/lilac.py
@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()
diff --git a/BioArchLinux/r-prediction/lilac.yaml b/BioArchLinux/r-prediction/lilac.yaml
new file mode 100644
index 0000000000..a3a933aa9d
--- /dev/null
+++ b/BioArchLinux/r-prediction/lilac.yaml
@@ -0,0 +1,40 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-data.table
+repo_makedepends:
+- r-aer
+- r-aod
+- r-betareg
+- r-biglm
+- r-brglm
+- r-caret
+- r-crch
+- r-e1071
+- r-earth
+- r-gam
+- r-gee
+- r-glmnet
+- r-glmx
+- r-kernlab
+- r-lme4
+- r-mclogit
+- r-mda
+- r-mnp
+- r-ordinal
+- r-plm
+- r-pscl
+- r-quantreg
+- r-sampleselection
+- r-speedglm
+- r-survey
+- r-testthat
+- r-truncreg
+update_on:
+- source: rpkgs
+  pkgname: prediction
+  repo: cran
+  md5: true
+- alias: r