diff --git a/BioArchLinux/r-delocal/PKGBUILD b/BioArchLinux/r-delocal/PKGBUILD new file mode 100644 index 0000000000..716a98a1e3 --- /dev/null +++ b/BioArchLinux/r-delocal/PKGBUILD @@ -0,0 +1,43 @@ +# Maintainer: Pekka Ristola + +_pkgname=DELocal +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Identifies differentially expressed genes with respect to other local genes" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-deseq2 + r-dplyr + r-ggplot2 + r-limma + r-matrixstats + r-reshape2 + r-summarizedexperiment +) +optdepends=( + r-biomart + r-knitr + r-pcredux + r-rmarkdown + r-stringr +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('6f595f5306f040c92e53f70db5fb4d81') +sha256sums=('85e1ceb9812f18727fa12bbc17691e3bfe89dc6686900d14245a773a1cce1395') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} diff --git a/BioArchLinux/r-delocal/lilac.py b/BioArchLinux/r-delocal/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-delocal/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-delocal/lilac.yaml b/BioArchLinux/r-delocal/lilac.yaml new file mode 100644 index 0000000000..233c427f7b --- /dev/null +++ b/BioArchLinux/r-delocal/lilac.yaml @@ -0,0 +1,18 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-deseq2 +- r-dplyr +- r-ggplot2 +- r-limma +- r-matrixstats +- r-reshape2 +- r-summarizedexperiment +update_on: +- source: rpkgs + pkgname: DELocal + repo: bioc + md5: true +- alias: r