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avida: basically fixed
This commit is contained in:
sukanka
parent
b63ddb5631
commit
6dc67d106d
4 changed files with 121 additions and 52 deletions
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@ -2,51 +2,64 @@
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# Contributor: Dmitriy Morozov <archlinux@foxcub.org>
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pkgname=avida
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pkgver=2.12.4
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pkgver=2.14.0
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pkgrel=1
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pkgdesc="A software platform to study evolution of digital organisms"
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arch=('i686' 'x86_64')
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url="http://avida.devosoft.org/"
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url="https://github.com/devosoft/avida"
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license=('GPL3' 'custom')
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depends=('gcc-libs' 'ncurses')
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makedepends=('cmake')
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source=("http://downloads.sourceforge.net/$pkgname/$pkgname-$pkgver-src.tar.gz"
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avida.patch)
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md5sums=('db4a687190f9fcc8b8ae84613d536d0a'
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'a7ac844269d3f169f53e8e30005755f5')
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makedepends=('cmake' 'git')
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source=("avida-$pkgver.tar.gz::${url}/archive/refs/tags/${pkgver}.tar.gz"
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"apto::git+https://github.com/dmbryson/apto.git"
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"documentation::git+https://github.com/devosoft/avida.wiki.git"
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'avida.patch'
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'apto.patch'
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)
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sha256sums=('65f141a0835d251f6d51dc6c949d34fd1db799512c805516caa3cac68fc73062'
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'SKIP'
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'SKIP'
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'ee332d5ee62b88be57592d5fb512c086284b3ebc93c57bb71c6d1751932bae1f'
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'76789e7fccce71edf676bbb3c5a7724c3cf2abf18ebf3a747dbe6b43cc7ad0c8')
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prepare() {
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cd "$srcdir/avida-$pkgver-src"
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patch -p 1 < ../avida.patch
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prepare(){
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cd "${srcdir}"
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cd avida-$pkgver
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patch --strip=1 < ../${pkgname}.patch
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# Fix depreciation -mno-fused-madd
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# sed -i 's|-mno-fused-madd|-std=c89|g' avida-core/CMakeLists.txt
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cd ../apto
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patch --strip=1 < ../apto.patch
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cd ..
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cp -rf apto/* avida-$pkgver/libs/apto
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rm -rf avida-$pkgver/libs/pdcurses
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cp -rf documentation/* avida-$pkgver/documentation
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}
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build() {
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cd "$srcdir/avida-$pkgver-src"
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cmake .
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cd "$srcdir"
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test -d out && rm -rf out
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mkdir out
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cd out
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# disable unit tests for apto
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# console interface ON
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cmake ../avida-$pkgver -DCMAKE_INSTALL_PREFIX=/usr \
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-DAPTO_UNIT_TESTS=OFF \
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-DAVD_UNIT_TESTS=OFF \
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-DAVD_GUI_NCURSES=ON \
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-DCMAKE_BUILD_TYPE=Release
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make
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}
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package() {
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cd "$srcdir/avida-$pkgver-src"
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# Install binaries and config files
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mkdir -p "${pkgdir}/opt/${pkgname}"
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install -m755 bin/avida* "${pkgdir}/opt/${pkgname}"
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install -m664 -g users avida-core/support/config/*.{cfg,org} "${pkgdir}/opt/${pkgname}"
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# Install headers and libraries
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mkdir -p "${pkgdir}/usr/"{include,lib}
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cp -r libs/apto/include/* "${pkgdir}/usr/include"
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cp -r lib/* "${pkgdir}/usr/lib"
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# Install launchers
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mkdir -p "${pkgdir}/usr/bin"
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echo 'cd /opt/avida && ./avida' > "${pkgdir}/usr/bin/avida"
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echo 'cd /opt/avida && ./avida-viewer' > "${pkgdir}/usr/bin/avida-viewer"
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chmod 755 "${pkgdir}/usr/bin/"{avida,avida-viewer}
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cd $srcdir/out
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make install DESTDIR="$pkgdir"
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# Install documentation and Apto license
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cd "$srcdir/avida-$pkgver"
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mkdir -p "${pkgdir}/usr/share/doc/${pkgname}"
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cp -r avida-core/documentation/* "${pkgdir}/usr/share/doc/${pkgname}"
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cp -r documentation/* "${pkgdir}/usr/share/doc/${pkgname}"
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install -Dm644 libs/apto/LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE_APTO"
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mv ${pkgdir}/usr/work ${pkgdir}/usr/lib/${pkgname}
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}
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19
fail/avida/apto.patch
Normal file
19
fail/avida/apto.patch
Normal file
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@ -0,0 +1,19 @@
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diff --git a/CMakeLists.txt b/CMakeLists.txt
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index 949804e..02b3fa4 100644
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -3,12 +3,14 @@ PROJECT(APTO CXX)
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CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
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# Default location for installed software/configs/ docs is the build directory.
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+IF(NOT CMAKE_INSTALL_PREFIX)
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SET(CMAKE_INSTALL_PREFIX
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"${PROJECT_BINARY_DIR}"
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CACHE PATH
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"Install path prefix, prepended onto install directories."
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FORCE
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)
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+ENDIF(NOT CMAKE_INSTALL_PREFIX)
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# Final software is built directly into the work subdirectory.
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SET(EXECUTABLE_OUTPUT_PATH
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@ -1,20 +1,57 @@
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--- avida-2.12.3-src.orig/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc 2012-02-02 22:50:29.000000000 +0600
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+++ avida-2.12.3-src/avida-core/source/analyze/cAnalyzeTreeStats_Gamma.cc 2012-05-08 19:32:18.793044457 +0600
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@@ -27,6 +27,7 @@
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#include <math.h>
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#include <iostream>
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+#include <cstdlib>
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using namespace std;
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--- avida-2.12.3-src.orig/avida-core/source/tools/tArray.h 2012-02-02 22:50:29.000000000 +0600
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+++ avida-2.12.3-src/avida-core/source/tools/tArray.h 2012-05-08 19:33:04.783042892 +0600
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@@ -24,6 +24,7 @@
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#define tArray_h
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#include <cassert>
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+#include <cstdlib>
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#ifndef NULL
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#define NULL 0
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diff --git a/CMakeLists.txt b/CMakeLists.txt
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index 30008d6..c9f1912 100644
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--- a/CMakeLists.txt
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+++ b/CMakeLists.txt
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@@ -23,10 +23,11 @@ ENDIF(NOT WIN32)
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ADD_SUBDIRECTORY(avida-core)
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# Default location for installed software/configs/ docs is the build directory.
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+IF(NOT CMAKE_INSTALL_PREFIX)
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SET(CMAKE_INSTALL_PREFIX
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"${PROJECT_BINARY_DIR}"
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CACHE PATH
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"Install path prefix, prepended onto install directories."
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FORCE
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)
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-
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+ENDIF(NOT CMAKE_INSTALL_PREFIX)
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diff --git a/avida-core/CMakeLists.txt b/avida-core/CMakeLists.txt
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index d9d063e..30c4f6a 100644
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--- a/avida-core/CMakeLists.txt
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+++ b/avida-core/CMakeLists.txt
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@@ -12,13 +12,14 @@ ENDIF(COMMAND cmake_policy)
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# PROJECT_BINARY_DIR, since the project didn't exist yet.
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# Default location for installed software/configs/ docs is the build directory.
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+IF(NOT CMAKE_INSTALL_PREFIX)
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SET(CMAKE_INSTALL_PREFIX
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"${PROJECT_BINARY_DIR}"
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CACHE PATH
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"Install path prefix, prepended onto install directories."
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FORCE
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)
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-
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+ENDIF(NOT CMAKE_INSTALL_PREFIX)
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# Final software is built directly into the work subdirectory.
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SET(EXECUTABLE_OUTPUT_PATH
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"${PROJECT_BINARY_DIR}/bin"
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diff --git a/libs/tcmalloc-1.4/CMakeLists.txt b/libs/tcmalloc-1.4/CMakeLists.txt
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index 59f8f1a..54873b1 100644
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--- a/libs/tcmalloc-1.4/CMakeLists.txt
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+++ b/libs/tcmalloc-1.4/CMakeLists.txt
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@@ -3,13 +3,14 @@ PROJECT(TCMALLOC CXX)
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CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
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# Default location for installed software/configs/ docs is the build directory.
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+IF(NOT CMAKE_INSTALL_PREFIX)
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SET(CMAKE_INSTALL_PREFIX
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"${PROJECT_BINARY_DIR}"
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CACHE PATH
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"Install path prefix, prepended onto install directories."
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FORCE
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)
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-
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+ENDIF(NOT CMAKE_INSTALL_PREFIX)
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# Final software is built directly into the work subdirectory.
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SET(EXECUTABLE_OUTPUT_PATH
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"${PROJECT_BINARY_DIR}/bin"
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@ -3,5 +3,5 @@ maintainers:
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email: starsareintherose@outlook.com
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build_prefix: extra-x86_64
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update_on:
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- source: cmd
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cmd: curl -sS "https://sourceforge.net/projects/avida/rss?path=/avida-stable" | grep '<link>' | grep 'src.zip' | sed 's/-/ /g' | awk '{print $3}' | head -n 1
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- source: github
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- github: devosoft/avida
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