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add beast2

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starsareintherose 2021-08-23 02:44:31 +08:00
parent b2761cf5ae
commit 6e92cb85dc
7 changed files with 116 additions and 0 deletions
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31
beast2/PKGBUILD Normal file
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# Maintainer: Malacology <guoyizhang at malacology dot com>
# Contributor: Malacology <guoyizhang at malacology dot com>
pkgname=beast2
pkgver=2.6.4
pkgrel=1
pkgdesc="Bayesian Evolutionary Analysis by Sampling Trees"
arch=('x86_64')
url="http://www.beast2.org/"
license=('LGPL-2.1 License')
provides=("beast2")
source=("https://github.com/CompEvol/beast2/releases/download/v${pkgver}/BEAST.v${pkgver}.Linux.tgz" "beauti.desktop" "densitree.desktop" "logcombiner.desktop" "treeannotator.desktop")
sha256sums=('4f80e2920eb9d87f3e9f64433119774dc67aca390fbd13dd480f852e3f8701a4'
'83fba4c776fd29d6852c9c412c31d98bff657e2d2d2763dfe46d4c6174a9495f'
'40d86086691b6cb91d0af54e5dc53d6693e084242ff3cc77862650ca78667c3d'
'c2057c6ac656e13dcfbdf580a696bc79cb22c3d5270d546eac3e2fb42d620f20'
'960a2d9030105156e178fe8fd5a8329cf10af1e16141623da47f649f059906b0')
depends=(
'java-runtime'
)
package() {
install -dm755 "$pkgdir"/usr/{bin,share/{beast2,applications}}
mv "$srcdir"/beast/* "$pkgdir"/usr/share/beast2
ln -s /usr/share/beast2/bin/beauti ${pkgdir}/usr/bin/beauti
ln -s /usr/share/beast2/bin/logcombiner ${pkgdir}/usr/bin/logcombiner
ln -s /usr/share/beast2/bin/treeannotator ${pkgdir}/usr/bin/treeannotator
ln -s /usr/share/beast2/bin/densitree ${pkgdir}/usr/bin/densitree
install -m 755 ${srcdir}/*.desktop ${pkgdir}/usr/share/applications
}

16
beast2/beauti.desktop Executable file
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[Desktop Entry]
Categories=
Encoding=UTF-8
Exec=/usr/share/beast2/bin/beauti
Icon=/usr/share/beast2/images/beauti.png
MimeType=
Name=beauti
ServiceTypes=
SwallowExec=
SwallowTitle=
Terminal=false
TerminalOptions=
Type=Application
X-KDE-SubstituteUID=false
X-KDE-Username=root
X-GNOME-UsesNotifications=true

18
beast2/densitree.desktop Executable file
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[Desktop Entry]
Categories=
Encoding=UTF-8
Exec=/usr/share/beast2/bin/densitree
GenericName=
GenericName[zh]=
Icon=/usr/share/beast2/images/DensiTree.png
MimeType=
Name=densitree
Name[zh]=densitree
ServiceTypes=
SwallowExec=
SwallowTitle=
Terminal=false
TerminalOptions=
Type=Application
X-KDE-SubstituteUID=false
X-KDE-Username=root

10
beast2/lilac.py Normal file
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#!/usr/bin/env python3
from lilaclib import *
def pre_build():
update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
def post_build():
git_add_files('PKGBUILD')
git_commit()

8
beast2/lilac.yaml Normal file
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build_prefix: multilib
maintainers:
- github: starsareintherose
email: starsareintherose@outlook.com
update_on:
- source: github
github: CompEvol/beast2
use_latest_release: true

16
beast2/logcombiner.desktop Executable file
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[Desktop Entry]
Categories=
Encoding=UTF-8
Exec=/usr/share/beast2/bin/logcombiner
Icon=/usr/share/beast2/images/beast.png
MimeType=
Name=logcombiner
Name[zh]=logcombiner
ServiceTypes=
SwallowExec=
SwallowTitle=
Terminal=false
TerminalOptions=
Type=Application
X-KDE-SubstituteUID=false
X-KDE-Username=root

17
beast2/treeannotator.desktop Executable file
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[Desktop Entry]
Categories=
Encoding=UTF-8
Exec=/usr/share/beast2/bin/treeannotator
GenericName=
GenericName[zh]=
Icon=/usr/share/beast2/images/beast.png
MimeType=
Name=treeannotator
ServiceTypes=
SwallowExec=
SwallowTitle=
Terminal=false
TerminalOptions=
Type=Application
X-KDE-SubstituteUID=false
X-KDE-Username=root