diff --git a/BioArchLinux/r-tsar/PKGBUILD b/BioArchLinux/r-tsar/PKGBUILD new file mode 100644 index 0000000000..80d9a7b3e2 --- /dev/null +++ b/BioArchLinux/r-tsar/PKGBUILD @@ -0,0 +1,54 @@ +# Maintainer: Pekka Ristola + +_pkgname=TSAR +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Thermal Shift Analysis in R" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(AGPL3) +depends=( + r-dplyr + r-ggplot2 + r-ggpubr + r-jsonlite + r-magrittr + r-minpack.lm + r-openxlsx + r-plotly + r-readxl + r-rhandsontable + r-shiny + r-shinyjs + r-shinywidgets + r-stringr + r-tidyr +) +checkdepends=( + r-testthat +) +optdepends=( + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('7cc8589151c5b03e247590bbd7dc04dd') +sha256sums=('bc75e3ad29377425c1da1b43cef760445d71ea47d8fc0a0390705d3778b9f0cd') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-tsar/lilac.py b/BioArchLinux/r-tsar/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-tsar/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-tsar/lilac.yaml b/BioArchLinux/r-tsar/lilac.yaml new file mode 100644 index 0000000000..6fdab99887 --- /dev/null +++ b/BioArchLinux/r-tsar/lilac.yaml @@ -0,0 +1,28 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-dplyr +- r-ggplot2 +- r-ggpubr +- r-jsonlite +- r-magrittr +- r-minpack.lm +- r-openxlsx +- r-plotly +- r-readxl +- r-rhandsontable +- r-shiny +- r-shinyjs +- r-shinywidgets +- r-stringr +- r-tidyr +repo_makedepends: +- r-testthat +update_on: +- source: rpkgs + pkgname: TSAR + repo: bioc + md5: true +- alias: r