Add biolibc based tools

BioArchLinux/fasda/PKGBUILD

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+# Maintainer: Bipin Kumar <bipin@ccmb.res.in>
+
+pkgname=fasda
+pkgver=0.1.2
+pkgrel=1
+pkgdesc=" Fast And Simple Differential Analysis of transcriptomic data"
+arch=('i686' 'x86_64')
+url="https://github.com/auerlab/fasda"
+license=('BSD-2')
+depends=('biolibc' 'libxtend')
+source=("$pkgname-$pkgver.tar.gz::https://github.com/auerlab/$pkgname/archive/refs/tags/$pkgver.tar.gz")
+sha256sums=('ea6003795b462286d4b7ea11924f424cdea418a345ceeccd1a04d679edf2374e')
+
+prepare() {
+  cd "$pkgname-$pkgver"
+  sed -i 's|${PREFIX}/libexec/fasda|${PREFIX}/lib/fasda|' Makefile
+}
+
+build() {
+  cd "$pkgname-$pkgver"
+  export VERSION=${pkgver}
+  make clean depend
+  make PREFIX="/usr"
+}
+
+package() {
+  cd "$pkgname-$pkgver"
+  make DESTDIR=$pkgdir PREFIX=/usr MANPREFIX=/usr/share install
+  install -Dm644 LICENSE -t "$pkgdir/usr/share/licenses/$pkgname"
+}

BioArchLinux/fasda/lilac.yaml

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+build_prefix: extra-x86_64
+maintainers:
+  - github: kbipinkumar
+    email: bipin@ccmb.res.in
+repo_depends:
+  - libxtend
+  - biolibc
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_add_files('PKGBUILD')
+  git_commit()
+  update_aur_repo()
+update_on:
+  - source: github
+    github: auerlab/fasda
+    use_max_tag: true

BioArchLinux/fastq-trim/PKGBUILD

@@ -0,0 +1,25 @@
+# Maintainer: Bipin Kumar <bipin@ccmb.res.in>
+
+pkgname=fastq-trim
+pkgver=0.1.2
+pkgrel=1
+pkgdesc="Lightening fast read trimmer"
+arch=('i686' 'x86_64')
+url="https://github.com/auerlab/fastq-trim"
+license=('BSD-2')
+depends=('biolibc' 'libxtend' 'bash')
+source=("$pkgname-$pkgver.tar.gz::https://github.com/auerlab/$pkgname/archive/refs/tags/$pkgver.tar.gz")
+sha256sums=('9b265aa6cc410a20479ff60d7fd5aa02c9a89c57624290887df4b9129aa1a70c')
+
+build() {
+  cd "$pkgname-$pkgver"
+  export VERSION=${pkgver}
+  make clean depend
+  make PREFIX="/usr"
+}
+
+package() {
+  cd "$pkgname-$pkgver"
+  make DESTDIR=$pkgdir PREFIX=/usr MANPREFIX=/usr/share install
+  install -Dm644 LICENSE -t "$pkgdir/usr/share/licenses/$pkgname"
+}

BioArchLinux/fastq-trim/lilac.yaml

@@ -0,0 +1,18 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: kbipinkumar
+    email: bipin@ccmb.res.in
+repo_depends:
+  - libxtend
+  - biolibc
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_add_files('PKGBUILD')
+  git_commit()
+  update_aur_repo()
+update_on:
+  - source: github
+    github: auerlab/fastq-trim
+    use_max_tag: true

BioArchLinux/generand/PKGBUILD

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+# Maintainer: Bipin Kumar <bipin@ccmb.res.in>
+
+pkgname=generand
+pkgver=0.1.2
+pkgrel=1
+pkgdesc="Simple and fast tool for generating random genomic data in common formats for testing and benchmarking purposes"
+arch=('i686' 'x86_64')
+url="https://github.com/auerlab/generand"
+license=('BSD-2')
+depends=('glibc')
+makedepends=('biolibc' 'libxtend')
+source=("$pkgname-$pkgver.tar.gz::https://github.com/auerlab/$pkgname/archive/refs/tags/$pkgver.tar.gz")
+sha256sums=('4d728b8dee36381a081022de25d3665297d625479b140fcb05dca87abc382d65')
+
+build() {
+  cd "$pkgname-$pkgver"
+  export VERSION=${pkgver}
+  make clean depend
+  make PREFIX="/usr"
+}
+
+package() {
+  cd "$pkgname-$pkgver"
+  install -d "$pkgdir"/usr/share/man
+  make DESTDIR="$pkgdir" PREFIX="/usr" MANPREFIX="/usr/share" install
+  rm -Rf "$pkgdir"/usr/man/
+  install -Dm644 LICENSE -t "$pkgdir/usr/share/licenses/$pkgname"
+}

BioArchLinux/generand/lilac.yaml

@@ -0,0 +1,18 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: kbipinkumar
+    email: bipin@ccmb.res.in
+repo_depends:
+  - libxtend
+  - biolibc
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_add_files('PKGBUILD')
+  git_commit()
+  update_aur_repo()
+update_on:
+  - source: github
+    github: auerlab/generand
+    use_max_tag: true