From 74747240526c24f24b5d68fc338b54fecd4629df Mon Sep 17 00:00:00 2001
From: Kiri <125180256+Kiri2002@users.noreply.github.com>
Date: Fri, 16 Jun 2023 21:57:10 +0800
Subject: [PATCH] python-*: Add python-biosequences, Fix python-biotite typo
 and Polish others (#151)

* biotite: fix typo error

* python-plotnine: Polish PKGBUILD

* python-biotite: Polish PKGBUILD

* python-mizani: Polish PKGBUILD

* python-biosequences: Add python-biosequences
---
 BioArchLinux/python-biosequences/PKGBUILD   | 25 +++++++++++++++++++++
 BioArchLinux/python-biosequences/lilac.yaml | 13 +++++++++++
 BioArchLinux/python-biotite/PKGBUILD        |  2 +-
 BioArchLinux/python-biotite/lilac.yaml      |  2 +-
 BioArchLinux/python-mizani/PKGBUILD         |  2 +-
 BioArchLinux/python-plotnine/PKGBUILD       |  2 +-
 6 files changed, 42 insertions(+), 4 deletions(-)
 create mode 100644 BioArchLinux/python-biosequences/PKGBUILD
 create mode 100644 BioArchLinux/python-biosequences/lilac.yaml

diff --git a/BioArchLinux/python-biosequences/PKGBUILD b/BioArchLinux/python-biosequences/PKGBUILD
new file mode 100644
index 0000000000..41c5a4525f
--- /dev/null
+++ b/BioArchLinux/python-biosequences/PKGBUILD
@@ -0,0 +1,25 @@
+# Maintainer: Kiri <kiri@vern.cc>
+
+pkgname='python-biosequences'
+_module=BioSequences
+pkgver=1.1.5
+pkgrel=1
+pkgdesc="Tools to analysis biology sequence"
+arch=('x86_64')
+url="https://github.com/Dragon-GCS/BioSequence"
+license=('GPL')
+depends=(python)
+makedepends=(python-setuptools)
+source=("${pkgname}-${pkgver}.tar.gz::https://files.pythonhosted.org/packages/source/${_module::1}/$_module/${_module}-$pkgver.tar.gz")
+sha256sums=('288283bb56860871648fda6c7557acd34ce95cb6f4bb362ab4bf60da916a21f2')
+
+build() {
+    cd "${srcdir}/${_module}-${pkgver}"
+    python setup.py build
+}
+
+package() {
+    cd "${srcdir}/${_module}-${pkgver}"
+    install -D -m644 LICENSE "${pkgdir}/usr/share/licenses/python-biosequences/LICENSE"
+    python setup.py install --root="${pkgdir}" --optimize=1 --skip-build
+}
diff --git a/BioArchLinux/python-biosequences/lilac.yaml b/BioArchLinux/python-biosequences/lilac.yaml
new file mode 100644
index 0000000000..5b546d46ca
--- /dev/null
+++ b/BioArchLinux/python-biosequences/lilac.yaml
@@ -0,0 +1,13 @@
+maintainers:
+  - github: kiri2002
+    email: kiri@vern.cc
+build_prefix: extra-x86_64
+pre_build_script: |
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+post_build_script: |
+  git_pkgbuild_commit()
+update_on:
+  - source: pypi
+    pypi: BioSequences
+  - alias: python
diff --git a/BioArchLinux/python-biotite/PKGBUILD b/BioArchLinux/python-biotite/PKGBUILD
index ab0ff23c31..94073cae4f 100644
--- a/BioArchLinux/python-biotite/PKGBUILD
+++ b/BioArchLinux/python-biotite/PKGBUILD
@@ -18,7 +18,7 @@ makedepends=(python-build
              python-wheel
              python-oldest-supported-numpy
              cython)
-source=("${pkgname}-${pkgver}.tar.gz::https://files.pythonhosted.org/packages/source/${_module::1}/$_module/${_module/-/_}-$pkgver.tar.gz")
+source=("${pkgname}-${pkgver}.tar.gz::https://files.pythonhosted.org/packages/source/${_module::1}/$_module/${_module}-$pkgver.tar.gz")
 sha256sums=('07442d02e1de16c3c350e2a808d43f67e0f2f61dd92e7281f000974dc63de09f')
 
 build() {
diff --git a/BioArchLinux/python-biotite/lilac.yaml b/BioArchLinux/python-biotite/lilac.yaml
index ee5324f7e5..9527973bc6 100644
--- a/BioArchLinux/python-biotite/lilac.yaml
+++ b/BioArchLinux/python-biotite/lilac.yaml
@@ -8,7 +8,7 @@ pre_build_script: |
 post_build_script: |
   git_pkgbuild_commit()
 repo_depends:
-  python-oldest-supported-numpy
+  - python-oldest-supported-numpy
 update_on:
   - source: pypi
     pypi: biotite
diff --git a/BioArchLinux/python-mizani/PKGBUILD b/BioArchLinux/python-mizani/PKGBUILD
index df69112ed6..1795e1825c 100644
--- a/BioArchLinux/python-mizani/PKGBUILD
+++ b/BioArchLinux/python-mizani/PKGBUILD
@@ -17,7 +17,7 @@ makedepends=(python-build
              python-installer
              python-setuptools-scm
              python-wheel)
-source=("${pkgname}-${pkgver}.tar.gz::https://files.pythonhosted.org/packages/source/${_module::1}/$_module/${_module/-/_}-$pkgver.tar.gz")
+source=("${pkgname}-${pkgver}.tar.gz::https://files.pythonhosted.org/packages/source/${_module::1}/$_module/${_module}-$pkgver.tar.gz")
 sha256sums=('1d481a4dc673caa9b7cfdc6505b9401f0e9a9f43434d748df0678a1a4017b0e2')
 
 build() {
diff --git a/BioArchLinux/python-plotnine/PKGBUILD b/BioArchLinux/python-plotnine/PKGBUILD
index edd44be159..ba781f6118 100644
--- a/BioArchLinux/python-plotnine/PKGBUILD
+++ b/BioArchLinux/python-plotnine/PKGBUILD
@@ -20,7 +20,7 @@ depends=(python
          python-wheel)
 makedepends=(python-build
              python-installer)
-source=("${pkgname}-${pkgver}.tar.gz::https://files.pythonhosted.org/packages/source/${_module::1}/$_module/${_module/-/_}-$pkgver.tar.gz")
+source=("${pkgname}-${pkgver}.tar.gz::https://files.pythonhosted.org/packages/source/${_module::1}/$_module/${_module}-$pkgver.tar.gz")
 sha256sums=('be852c6e50e331ad250151dc4120f269ee9ae5e795f67030f7794718b502592a')
 
 build() {