mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
r-*: use metadata checks for several packages
This commit is contained in:
Pekka Ristola
parent
42cfd64eb6
commit
76496e944f
15 changed files with 108 additions and 92 deletions
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@ -3,24 +3,25 @@
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_pkgname=combinat
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_pkgver=0.0-8
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pkgname=r-${_pkgname,,}
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pkgver=0.0.8
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pkgver=${_pkgver//-/.}
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pkgrel=8
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pkgdesc='combinatorics utilities'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="combinatorics utilities"
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arch=(any)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL2)
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depends=(
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r
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('1513cf6b6ed74865bfdd9f8ca58feae12b62f38965d1a32c6130bef810ca30c1')
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md5sums=('8fb5132227894e7e5e01d8183395a7ac')
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b2sums=('7fcfb38c482be4dec2a10ef05a508fb13ae5f5e17066d65c3b3318f5268a6a718c9bd406f5dcc2dbf4d2d4b7af7ea53a8072422b79b9355d795f39c3ba9a0e02')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,16 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(
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_G,
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expect_needscompilation = "",
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)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: combinat_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=combinat
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- source: rpkgs
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pkgname: combinat
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repo: cran
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md5: true
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- alias: r
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@ -3,24 +3,25 @@
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_pkgname=idr
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_pkgver=1.3
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pkgname=r-${_pkgname,,}
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pkgver=1.3
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pkgver=${_pkgver//-/.}
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pkgrel=5
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pkgdesc='Irreproducible discovery rate'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Irreproducible Discovery Rate"
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arch=(any)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL)
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depends=(
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r
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('6b3910dc48495439cd01828f8999823864a6712f73560ee3e6c903065c67d1e4')
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md5sums=('d3fcfef19b12cd9c0867fd607ab7ca5b')
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b2sums=('74cf7fa749e436e1782e77af54101f3bf5508b6fecb0d6a8a343f0ba2b8a600a464c459f750a8a2e9c24422351cbeac2da12fc31ed2571e74d697da38f5cbf3d')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: idr_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=idr
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- source: rpkgs
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pkgname: idr
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repo: cran
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md5: true
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- alias: r
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@ -3,24 +3,25 @@
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_pkgname=Illumina450ProbeVariants.db
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_pkgver=1.38.0
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pkgname=r-${_pkgname,,}
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pkgver=1.38.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('GPL')
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pkgdesc="Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(GPL3)
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depends=(
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r
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)
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source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('4b943ad15236b6d7190d3572aec4b26386756f423c441e8b2f5d88e66b6318c0')
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md5sums=('ca34eec73a57e5f226b70a20ef706ee3')
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b2sums=('83110d4127bc4963140a54c046a3233945422f7ca1137addb41ef531d96130d3f6279bba852869d1638bfc6783ab16b4e2846c9b28ae3f66dd8474a3fac07039')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: Illumina450ProbeVariants.db_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/Illumina450ProbeVariants.db
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- source: rpkgs
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pkgname: Illumina450ProbeVariants.db
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repo: bioc-data-experiment
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md5: true
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- alias: r
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@ -3,31 +3,30 @@
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_pkgname=pls
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_pkgver=2.8-3
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pkgname=r-${_pkgname,,}
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pkgver=2.8.3
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Partial Least Squares and Principal Component Regression'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Partial Least Squares and Principal Component Regression"
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arch=(any)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL2)
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depends=(
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r
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)
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optdepends=(
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r-mass
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r-parallel
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r-rmpi
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r-runit
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r-testthat
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('e6eb728dd38cd4867698df06e02601ed767e69098b1daadde5beef634ae66be3')
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md5sums=('3206a18410583f0672f02cac9dbedce5')
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b2sums=('0f403612c86ce91b40e810f4311c69e0d965dc96b1ec6b9a56a7ae2b7603f0051f0f72079ad318cbe7e933122942fc422f6da3746db823d8e2dd9949222e8333')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: pls_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=pls
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- source: rpkgs
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pkgname: pls
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repo: cran
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md5: true
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- alias: r
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@ -3,24 +3,25 @@
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_pkgname=RPMM
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_pkgver=1.25
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pkgname=r-${_pkgname,,}
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pkgver=1.25
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pkgver=${_pkgver//-/.}
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pkgrel=8
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pkgdesc='Recursively Partitioned Mixture Model'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Recursively Partitioned Mixture Model"
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arch=(any)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL)
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depends=(
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r
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('f04a524b13918062616beda50c4e759ce2719ce14150a0e677d07132086c88c8')
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md5sums=('3b449d676fd71ec4493db50e7f849dc9')
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b2sums=('0232bec224a2c3f63ad34b2f980fc356e4bd77dc75fc7ca4b1655955dcb126eaf492c43486ea5276bbe5451427c6d7d4555d5b5c7045dc50f6a63c566acf9538')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: RPMM_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=RPMM
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- source: rpkgs
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pkgname: RPMM
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repo: cran
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md5: true
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- alias: r
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|
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|||
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