diff --git a/BioArchLinux/r-performance/PKGBUILD b/BioArchLinux/r-performance/PKGBUILD index 0a8456432d..7345faf133 100644 --- a/BioArchLinux/r-performance/PKGBUILD +++ b/BioArchLinux/r-performance/PKGBUILD @@ -1,20 +1,48 @@ -# Maintainer: Hu Butui +# Maintainer: Pekka Ristola +# Contributor: Hu Butui _pkgname=performance _pkgver=0.10.5 pkgname=r-${_pkgname,,} -pkgver=0.10.5 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Assessment of Regression Models Performance' -arch=('any') +pkgdesc="Assessment of Regression Models Performance" +arch=(any) url="https://cran.r-project.org/package=${_pkgname}" -license=('GPL') +license=(GPL3) depends=( - r r-bayestestr r-datawizard r-insight ) +checkdepends=( + r-aer + r-afex + r-bayesfactor + r-betareg + r-bigutilsr + r-curl + r-dbscan + r-estimatr + r-fixest + r-glmmtmb + r-httr + r-ics + r-icsoutlier + r-islr + r-ivreg + r-lavaan + r-lme4 + r-mclogit + r-metafor + r-nonnest2 + r-ordinal + r-parameters + r-pscl + r-rstanarm + r-rstantools + r-testthat +) optdepends=( r-aer r-afex @@ -23,7 +51,6 @@ optdepends=( r-betareg r-bigutilsr r-blavaan - r-boot r-brms r-car r-compquadform @@ -36,7 +63,6 @@ optdepends=( r-gamm4 r-ggplot2 r-glmmtmb - r-graphics r-hmisc r-httr r-ics @@ -47,23 +73,19 @@ optdepends=( r-lme4 r-lmtest r-loo - r-mass - r-matrix r-mclogit r-mclust r-metadat r-metafor - r-mgcv r-mlogit r-multimode - r-nlme r-nonnest2 r-ordinal - r-parallel r-parameters r-patchwork r-pscl r-psych + r-qqplotr r-randomforest r-rmarkdown r-rstanarm @@ -71,21 +93,33 @@ optdepends=( r-sandwich r-see r-survey - r-survival r-testthat r-tweedie r-vgam r-withr ) source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('79b638bc9062c40848cb38670b980c20') sha256sums=('d91c0dc1ab7e32868c750357b3af4e98f2bf972f724d9f6e50de4015c56f8caf') +prepare() { + # skip failing tests + cd "$_pkgname/tests/testthat" + sed -i '/"brms_mixed_1"/i\ \ skip("fails")' test-icc.R + sed -i '/"model_performance.brmsfit"/a\ \ skip("fails")' test-model_performance.bayesian.R +} + build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: diff --git a/BioArchLinux/r-performance/lilac.py b/BioArchLinux/r-performance/lilac.py index bd219c037c..b5cdb057c5 100644 --- a/BioArchLinux/r-performance/lilac.py +++ b/BioArchLinux/r-performance/lilac.py @@ -1,12 +1,13 @@ #!/usr/bin/env python3 from lilaclib import * +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + def pre_build(): - for line in edit_file('PKGBUILD'): - if line.startswith('_pkgver='): - line = f'_pkgver={_G.newver}' - print(line) - update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.')) + r_pre_build(_G) def post_build(): git_pkgbuild_commit() diff --git a/BioArchLinux/r-performance/lilac.yaml b/BioArchLinux/r-performance/lilac.yaml index a5af94eb2d..807620d94f 100644 --- a/BioArchLinux/r-performance/lilac.yaml +++ b/BioArchLinux/r-performance/lilac.yaml @@ -1,12 +1,41 @@ build_prefix: extra-x86_64 maintainers: -- github: hubutui +- github: pekkarr + email: pekkarr@protonmail.com repo_depends: - r-bayestestr - r-datawizard - r-insight +repo_makedepends: +- r-aer +- r-afex +- r-bayesfactor +- r-betareg +- r-bigutilsr +- r-curl +- r-dbscan +- r-estimatr +- r-fixest +- r-glmmtmb +- r-httr +- r-ics +- r-icsoutlier +- r-islr +- r-ivreg +- r-lavaan +- r-lme4 +- r-mclogit +- r-metafor +- r-nonnest2 +- r-ordinal +- r-parameters +- r-pscl +- r-rstanarm +- r-rstantools +- r-testthat update_on: -- regex: performance_([\d._-]+).tar.gz - source: regex - url: https://cran.r-project.org/package=performance +- source: rpkgs + pkgname: performance + repo: cran + md5: true - alias: r