From 7f159ee7cc4fa666654d9a1fc58d3c2724d2462b Mon Sep 17 00:00:00 2001
From: Kuoi <starsareintherose@outlook.com>
Date: Fri, 11 Feb 2022 23:16:52 +0000
Subject: [PATCH] add jags

---
 BioArchLinux/jags/PKGBUILD      | 24 ++++++++++++++++++++++++
 BioArchLinux/jags/lilac.py      | 12 ++++++++++++
 BioArchLinux/jags/lilac.yaml    | 10 ++++++++++
 BioArchLinux/r-rjags/lilac.yaml |  2 ++
 4 files changed, 48 insertions(+)
 create mode 100644 BioArchLinux/jags/PKGBUILD
 create mode 100755 BioArchLinux/jags/lilac.py
 create mode 100755 BioArchLinux/jags/lilac.yaml

diff --git a/BioArchLinux/jags/PKGBUILD b/BioArchLinux/jags/PKGBUILD
new file mode 100644
index 0000000000..d6d474f1e1
--- /dev/null
+++ b/BioArchLinux/jags/PKGBUILD
@@ -0,0 +1,24 @@
+# Maintainer: Miguel de Val-Borro <miguel at archlinux dot net>
+# Contributor: miggy <jkomdl at gmail dot com>
+
+pkgname=jags
+pkgver=4.3.0
+pkgrel=1
+pkgdesc="Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation"
+arch=('x86_64' 'i686')
+url="http://mcmc-jags.sourceforge.net/"
+license=('GPL')
+depends=('lapack' 'libtool')
+options=('!libtool')
+makedepends=('gcc-fortran' 'lapack')
+source=(http://downloads.sourceforge.net/project/mcmc-jags/JAGS/${pkgver: 0: 1}.x/Source/JAGS-$pkgver.tar.gz)
+md5sums=('d88dff326603deee39ce7fa4234c5a43')
+build () {
+	cd "$srcdir/JAGS-$pkgver"
+	./configure --prefix=/usr --libexecdir=/usr/lib/${pkgname}
+	make
+}
+package() {
+	cd "$srcdir/JAGS-$pkgver"
+	make DESTDIR="$pkgdir/" install
+}
diff --git a/BioArchLinux/jags/lilac.py b/BioArchLinux/jags/lilac.py
new file mode 100755
index 0000000000..19737b8d62
--- /dev/null
+++ b/BioArchLinux/jags/lilac.py
@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_pkgbuild_commit()
+# vim:set ts=2 sw=2 et:
+
diff --git a/BioArchLinux/jags/lilac.yaml b/BioArchLinux/jags/lilac.yaml
new file mode 100755
index 0000000000..0dd513a770
--- /dev/null
+++ b/BioArchLinux/jags/lilac.yaml
@@ -0,0 +1,10 @@
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+build_prefix: extra-x86_64
+update_on:
+  - source: regex
+    url: "https://mcmc-jags.sourceforge.io/"
+    regex: 'The latest release is JAGS (\d+.\d+.\d+).'
+# vim:set ts=2 sw=2 et:
+
diff --git a/BioArchLinux/r-rjags/lilac.yaml b/BioArchLinux/r-rjags/lilac.yaml
index 850f7fa89e..0ee75b8198 100644
--- a/BioArchLinux/r-rjags/lilac.yaml
+++ b/BioArchLinux/r-rjags/lilac.yaml
@@ -8,3 +8,5 @@ update_on:
 - regex: rjags_([\d._-]+).tar.gz
   source: regex
   url: https://cran.r-project.org/package=rjags
+repo_depends:
+  - jags