r-enmcb: use latest sources, use metadata checks

BioArchLinux/r-enmcb/PKGBUILD

@@ -1,16 +1,15 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=EnMCB
-_pkgver=1.8.2
+_pkgver=1.14.0
 pkgname=r-${_pkgname,,}
-pkgver=1.8.2
+pkgver=${_pkgver//-/.}
-pkgrel=9
+pkgrel=0
-pkgdesc='Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models'
+pkgdesc="Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models"
-arch=('any')
+arch=(any)
-url="https://bioconductor.org/packages/3.15/${_pkgname}"
+url="https://bioconductor.org/packages/$_pkgname"
-license=('GPL')
+license=('GPL-2.0-only')
 depends=(
-  r
   r-biocfilecache
   r-e1071
   r-ggplot2
@@ -32,15 +31,16 @@ optdepends=(
   r-survminer
   r-testthat
 )
-source=("https://bioconductor.org/packages/3.15/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('847b4ad1e11d292f898f5221fc4f54bba9f8d5cf1530be8f54b4969f893ecace')
+md5sums=('f9fee363d9285ffdf2895062fc0cf26b')
+b2sums=('a5de7b457fd8eaddf133739616afe80daf7935a3715e38d4d096108c1a272f96ac2ba23fa40ff309e917230cba6326f8f2680db6d365fcb30b2243ac8c74805a')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-enmcb/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-enmcb/lilac.yaml

@@ -13,7 +13,8 @@ repo_depends:
 - r-survivalroc
 - r-survivalsvm
 update_on:
-- regex: EnMCB_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: EnMCB
-  url: https://bioconductor.org/packages/3.15/EnMCB
+  repo: bioc
+  md5: true
 - alias: r