From 8224d38690f727642b2f0831bbee16d52794df18 Mon Sep 17 00:00:00 2001
From: sukanka <su975853527@gmail.com>
Date: Sun, 10 Jul 2022 00:37:47 +0800
Subject: [PATCH] tabixpp is ready

---
 BioArchLinux/htslib/lilac.py                  | 12 ++++--
 BioArchLinux/htslib/lilac.yaml                |  2 +
 {prepare => BioArchLinux}/tabixpp/PKGBUILD    |  0
 .../htslib => BioArchLinux/tabixpp}/lilac.py  |  0
 {prepare => BioArchLinux}/tabixpp/lilac.yaml  |  2 +
 prepare/htslib/PKGBUILD                       | 41 -------------------
 prepare/htslib/liac.yaml                      | 10 -----
 prepare/tabixpp/lilac.py                      | 14 -------
 8 files changed, 12 insertions(+), 69 deletions(-)
 rename {prepare => BioArchLinux}/tabixpp/PKGBUILD (100%)
 rename {prepare/htslib => BioArchLinux/tabixpp}/lilac.py (100%)
 rename {prepare => BioArchLinux}/tabixpp/lilac.yaml (88%)
 delete mode 100644 prepare/htslib/PKGBUILD
 delete mode 100644 prepare/htslib/liac.yaml
 delete mode 100644 prepare/tabixpp/lilac.py

diff --git a/BioArchLinux/htslib/lilac.py b/BioArchLinux/htslib/lilac.py
index 8c66f58ed6..43394d7b73 100644
--- a/BioArchLinux/htslib/lilac.py
+++ b/BioArchLinux/htslib/lilac.py
@@ -1,10 +1,14 @@
 #!/usr/bin/env python3
-
 from lilaclib import *
 
+
 def pre_build():
-  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
 
 def post_build():
-  git_add_files('PKGBUILD')
-  git_commit()
+    git_pkgbuild_commit()
diff --git a/BioArchLinux/htslib/lilac.yaml b/BioArchLinux/htslib/lilac.yaml
index 6fbed38ade..22e52ffbf7 100644
--- a/BioArchLinux/htslib/lilac.yaml
+++ b/BioArchLinux/htslib/lilac.yaml
@@ -6,3 +6,5 @@ update_on:
   - source: github
     github: samtools/htslib
     use_max_tag: true
+  - source: aur
+    aur: htslib
diff --git a/prepare/tabixpp/PKGBUILD b/BioArchLinux/tabixpp/PKGBUILD
similarity index 100%
rename from prepare/tabixpp/PKGBUILD
rename to BioArchLinux/tabixpp/PKGBUILD
diff --git a/prepare/htslib/lilac.py b/BioArchLinux/tabixpp/lilac.py
similarity index 100%
rename from prepare/htslib/lilac.py
rename to BioArchLinux/tabixpp/lilac.py
diff --git a/prepare/tabixpp/lilac.yaml b/BioArchLinux/tabixpp/lilac.yaml
similarity index 88%
rename from prepare/tabixpp/lilac.yaml
rename to BioArchLinux/tabixpp/lilac.yaml
index b35727ae1e..fea2e3d36a 100644
--- a/prepare/tabixpp/lilac.yaml
+++ b/BioArchLinux/tabixpp/lilac.yaml
@@ -2,6 +2,8 @@ build_prefix: extra-x86_64
 maintainers:
 - github: sukanka
   email: su975853527@gmail.com
+repo_depends:
+- htslib
 update_on:
 - source: github
   github: vcflib/tabixpp
diff --git a/prepare/htslib/PKGBUILD b/prepare/htslib/PKGBUILD
deleted file mode 100644
index c2861167d1..0000000000
--- a/prepare/htslib/PKGBUILD
+++ /dev/null
@@ -1,41 +0,0 @@
-# Maintainer:  Andrew O'Neill <andrew at meanjollies dot com>
-# Contributor: Christopher Vittal ("viralstitch") <chris@vittal.dev>
-
-pkgname=htslib
-_pkgver=1.15.1
-pkgver=1.15.1
-pkgrel=1
-pkgdesc='A C library for high-throughput sequencing data formats'
-arch=('x86_64')
-url="https://github.com/samtools/${pkgname}"
-license=('custom')
-depends=('bzip2' 'curl' 'xz')
-provides=('tabix')
-replaces=('tabix')
-conflicts=('tabix')
-options=('staticlibs')
-source=("${pkgname}-${pkgver}.tar.bz2::${url}/releases/download/${pkgver}/${pkgname}-${pkgver}.tar.bz2")
-sha256sums=('8d7f8bf9658226942eeab70af2a22aca618577eaa8fe2ed9416ee306d5351aa1')
-
-build() {
-  cd "${pkgname}-${pkgver}"
-
-  ./configure \
-    --prefix=/usr \
-    --enable-libcurl \
-    --enable-plugins \
-    --with-plugin-dir=/usr/lib/htslib/plugins
-
-  make
-}
-
-package() {
-  cd "${pkgname}-${pkgver}"
-
-  make DESTDIR=${pkgdir} install
-
-  install -Dm644 LICENSE "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-
-  # htslib shared library comes installed as 0644
-  chmod +x ${pkgdir}/usr/lib/libhts.so.*.*
-}
diff --git a/prepare/htslib/liac.yaml b/prepare/htslib/liac.yaml
deleted file mode 100644
index c38363d0e4..0000000000
--- a/prepare/htslib/liac.yaml
+++ /dev/null
@@ -1,10 +0,0 @@
-build_prefix: extra-x86_64
-maintainers:
-- github: sukanka
-  email: su975853527@gmail.com
-update_on:
-- source: github
-  github: samtools/htslib
-  use_max_tag: true
-- source: aur
-  aur: htslib
diff --git a/prepare/tabixpp/lilac.py b/prepare/tabixpp/lilac.py
deleted file mode 100644
index 43394d7b73..0000000000
--- a/prepare/tabixpp/lilac.py
+++ /dev/null
@@ -1,14 +0,0 @@
-#!/usr/bin/env python3
-from lilaclib import *
-
-
-def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
-
-
-def post_build():
-    git_pkgbuild_commit()