diff --git a/BioArchLinux/r-lpnet/PKGBUILD b/BioArchLinux/r-lpnet/PKGBUILD index 325586b129..0b74990101 100644 --- a/BioArchLinux/r-lpnet/PKGBUILD +++ b/BioArchLinux/r-lpnet/PKGBUILD @@ -1,27 +1,28 @@ # Maintainer: Guoyi Zhang _pkgname=lpNet -_pkgver=2.34.1 +_pkgver=2.34.2 pkgname=r-${_pkgname,,} -pkgver=2.34.1 -pkgrel=1 -pkgdesc='Linear Programming Model for Network Inference' -arch=('any') -url="https://bioconductor.org/packages/${_pkgname}" -license=('Artistic2.0') +pkgver=${_pkgver//-/.} +pkgrel=0 +pkgdesc="Linear Programming Model for Network Inference" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" +license=('Artistic-2.0') depends=( - r + r-kegggraph r-lpsolve ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('8fb89dcbd3c1d2eb43338961a9dc565efaf3a844db853613a7d1c1cdae41eefd') +md5sums=('98de40db5eda03f2ae3b35cf04c6882c') +b2sums=('1c248f30f0471c7a3fe31a2d79ca8cdc428d88e6b0f799366a0f2bf0b59dd599df45c9912d498d78cfc197cd259eea832841ebf7ea139b0f5f63440bb9d087a2') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: diff --git a/BioArchLinux/r-lpnet/lilac.py b/BioArchLinux/r-lpnet/lilac.py index bd219c037c..9b979bf07c 100644 --- a/BioArchLinux/r-lpnet/lilac.py +++ b/BioArchLinux/r-lpnet/lilac.py @@ -1,12 +1,16 @@ #!/usr/bin/env python3 from lilaclib import * +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + def pre_build(): - for line in edit_file('PKGBUILD'): - if line.startswith('_pkgver='): - line = f'_pkgver={_G.newver}' - print(line) - update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.')) + r_pre_build( + _G, + expect_license = "Artistic License 2.0", + ) def post_build(): git_pkgbuild_commit() diff --git a/BioArchLinux/r-lpnet/lilac.yaml b/BioArchLinux/r-lpnet/lilac.yaml index 882e28f16b..d7989de162 100644 --- a/BioArchLinux/r-lpnet/lilac.yaml +++ b/BioArchLinux/r-lpnet/lilac.yaml @@ -3,9 +3,11 @@ maintainers: - github: starsareintherose email: kuoi@bioarchlinux.org repo_depends: +- r-kegggraph - r-lpsolve update_on: -- regex: lpNet_([\d._-]+).tar.gz - source: regex - url: https://bioconductor.org/packages/lpNet +- source: rpkgs + pkgname: lpNet + repo: bioc + md5: true - alias: r