r-metabma: fix compilation, use metadata checks

BioArchLinux/r-metabma/PKGBUILD

@@ -1,46 +1,57 @@
-# system requirements: GNU make
-# Maintainer: sukanka <su975853527@gmail.com>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: sukanka <su975853527@gmail.com>
 
 _pkgname=metaBMA
-_pkgver=0.6.7
+_pkgver=0.6.9
 pkgname=r-${_pkgname,,}
-pkgver=0.6.7
-pkgrel=6
-pkgdesc='Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis'
-arch=('x86_64')
+pkgver=${_pkgver//-/.}
+pkgrel=0
+pkgdesc="Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis"
+arch=(x86_64)
 url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+license=(GPL3)
 depends=(
-  r
-  r-bh
   r-bridgesampling
   r-coda
   r-laplacesdemon
   r-logspline
   r-mvtnorm
   r-rcpp
-  r-rcppeigen
   r-rcppparallel
   r-rstan
   r-rstantools
+)
+makedepends=(
+  r-bh
+  r-rcppeigen
   r-stanheaders
 )
+checkdepends=(
+  r-testthat
+)
 optdepends=(
   r-knitr
   r-rmarkdown
   r-spelling
   r-testthat
 )
-makedepends=('make')
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('330bccb4b2297bc3a8b7291197c5e978b90b002907f762ede40f2d3e383367da')
+md5sums=('0eb28a09739c53d68ecd1c72101b5746')
+sha256sums=('c1e43fdc4c866a065c11bfa65b9f895256d0a11a19861c5212fbd4f82a6205f8')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  # compilation needs a lot of memory
+  MAKEFLAGS+=" -j1"
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-metabma/lilac.py

@@ -1,17 +1,17 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
-# we use 5 threads in BioArchLinux, but it should not be pushed to aur.
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        elif line.startswith('build()'):
-            line += '\n' + 'export MAKE="make -j5"'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "GNU make",
+    )
 
 def post_build():
-    run_cmd(['sh', '-c', "sed -i '/export MAKE/d' PKGBUILD"])
     git_pkgbuild_commit()
     update_aur_repo()

BioArchLinux/r-metabma/lilac.yaml

@@ -1,21 +1,25 @@
 build_prefix: extra-x86_64
 maintainers:
-  - github: sukanka
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
-  - r-bh
-  - r-bridgesampling
-  - r-coda
-  - r-laplacesdemon
-  - r-logspline
-  - r-mvtnorm
-  - r-rcpp
-  - r-rcppeigen
-  - r-rcppparallel
-  - r-rstan
-  - r-rstantools
-  - r-stanheaders
+- r-bridgesampling
+- r-coda
+- r-laplacesdemon
+- r-logspline
+- r-mvtnorm
+- r-rcpp
+- r-rcppparallel
+- r-rstan
+- r-rstantools
+repo_makedepends:
+- r-bh
+- r-rcppeigen
+- r-stanheaders
+- r-testthat
 update_on:
-  - regex: metaBMA_([\d._-]+).tar.gz
-    source: regex
-    url: https://cran.r-project.org/package=metaBMA
-  - alias: r
+- source: rpkgs
+  pkgname: metaBMA
+  repo: cran
+  md5: true
+- alias: r