diff --git a/BioArchLinux/r-clubsandwich/PKGBUILD b/BioArchLinux/r-clubsandwich/PKGBUILD new file mode 100644 index 0000000000..ab214fd5ee --- /dev/null +++ b/BioArchLinux/r-clubsandwich/PKGBUILD @@ -0,0 +1,63 @@ +# Maintainer: Pekka Ristola + +_pkgname=clubSandwich +_pkgver=0.5.10 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections" +arch=(any) +url="https://cran.r-project.org/package=${_pkgname}" +license=(GPL3) +depends=( + r-sandwich +) +checkdepends=( + r-aer + r-cardata + r-geepack + r-ivreg + r-lme4 + r-metadat + r-metafor + r-mlmrev + r-plm + r-robumeta + r-testthat +) +optdepends=( + r-aer + r-cardata + r-covr + r-formula + r-geepack + r-ivreg + r-knitr + r-lme4 + r-metadat + r-metafor + r-mlmrev + r-plm + r-rmarkdown + r-robumeta + r-testthat + r-zoo +) +source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('e1902cb9a93ccf46f1eedf96396280d9') +sha256sums=('daf0b372f0e6aae141d45b78b69c6f680c774f201691a1333400073001c6a463') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-clubsandwich/lilac.py b/BioArchLinux/r-clubsandwich/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-clubsandwich/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-clubsandwich/lilac.yaml b/BioArchLinux/r-clubsandwich/lilac.yaml new file mode 100644 index 0000000000..cecfbfe63b --- /dev/null +++ b/BioArchLinux/r-clubsandwich/lilac.yaml @@ -0,0 +1,24 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-sandwich +repo_makedepends: +- r-aer +- r-cardata +- r-geepack +- r-ivreg +- r-lme4 +- r-metadat +- r-metafor +- r-mlmrev +- r-plm +- r-robumeta +- r-testthat +update_on: +- source: rpkgs + pkgname: clubSandwich + repo: cran + md5: true +- alias: r