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python-pyhmmer: Update python-pyhmmer PKGBUILD (#256)

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* Update `pyhmmer` PKGBUILD

* python-pyhmmer: Fix ${srcdir} paths and add `git` to `makedepends`

* python-pyhmmer: fix path to `COPYING`
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Martin Larralde 2025-01-20 14:55:01 +01:00 • committed by GitHub
parent 089982dd72
commit 91d162201b
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GPG key ID: B5690EEEBB952194
1 changed files with 19 additions and 11 deletions
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30
BioArchLinux/python-pyhmmer/PKGBUILD
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@ -2,16 +2,16 @@
_name=pyhmmer
pkgname=python-${_name}
pkgver=0.10.15
pkgrel=2
pkgver=0.11.0
pkgrel=1
pkgdesc="Cython bindings to HMMER3. https://doi.org/10.1093/bioinformatics/btad214"
arch=('i686' 'x86_64' 'arm' 'armv6h' 'armv7h' 'aarch64')
arch=('i686' 'pentium4' 'x86_64' 'arm' 'armv6h' 'armv7h' 'aarch64')
url="https://github.com/althonos/pyhmmer"
license=("MIT")
depends=('python' 'glibc' 'python-psutil')
makedepends=('git' 'python-setuptools' 'cython' 'python-build' 'python-installer' 'python-wheel')
depends=('python' 'gcc-libs' 'glibc' 'python-psutil')
makedepends=('git' 'cython' 'python-build' 'python-installer' 'cmake' 'ninja' 'python-scikit-build-core')
source=("git+https://github.com/althonos/pyhmmer.git#tag=v$pkgver")
sha256sums=('1c296dfc6c59f230d10a8e68143a39ae9abf7362b70dd9ced876269137ca6fea')
sha256sums=('a078632dd48d06486c20b1c15883db184fdaa67f9fadef9deac974cfa1c0b68c')
prepare() {
cd "${srcdir}/${_name}"
@ -20,19 +20,27 @@ prepare() {
build() {
cd "${srcdir}/${_name}"
python -m build --wheel --no-isolation
python -m build --wheel --no-isolation --skip-dependency-check
}
check() {
local pyver=$(python -c 'import sys; print(sys.implementation.cache_tag)')
local abitag=$(python -c 'import sys; print(*sys.version_info[:2], sep="")')
local machine=$(python -c 'import platform; print(platform.machine())')
cd "${srcdir}/${_name}/build/lib.linux-${machine}-${pyver}"
whl="${srcdir}/${_name}/dist/${_name}-${pkgver}-cp${abitag}-cp${abitag}-linux_${machine}.whl"
rm -rf "${srcdir}/env"
python -m venv --symlinks --system-site-packages "${srcdir}/env"
source "${srcdir}/env/bin/activate"
python -m installer "$whl"
python -m unittest ${_name}.tests
}
package() {
local abitag=$(python -c 'import sys; print(*sys.version_info[:2], sep="")')
local machine=$(python -c 'import platform; print(platform.machine())')
python -m installer --destdir="$pkgdir" "${srcdir}/${_name}/dist/${_name}-${pkgver}-cp${abitag}-cp${abitag}-linux_${machine}.whl"
install -Dm644 "${srcdir}/${_name}/COPYING" "$pkgdir/usr/share/licenses/$pkgname/COPYING"
whl="${srcdir}/${_name}/dist/${_name}-${pkgver}-cp${abitag}-cp${abitag}-linux_${machine}.whl"
python -m installer --prefix="${pkgdir}/usr" "$whl"
install -Dm644 ${srcdir}/${_name}/COPYING "$pkgdir/usr/share/licenses/$pkgname/COPYING"
}