fix: 93

BioArchLinux/htslib/PKGBUILD

@@ -3,7 +3,7 @@
 
 pkgname=htslib
 pkgver=1.16
-pkgrel=2
+pkgrel=3
 pkgdesc='A C library for high-throughput sequencing data formats. https://doi.org/10.1093/gigascience/giab007'
 arch=('x86_64')
 url="https://github.com/samtools/${pkgname}"

BioArchLinux/htslib/lilac.yaml

@@ -8,3 +8,4 @@ update_on:
     use_max_tag: true
   - source: aur
     aur: htslib
+  - alias: libcrypto

BioArchLinux/phylosuite/PKGBUILD

@@ -3,7 +3,7 @@
 
 pkgname=phylosuite
 pkgver=1.2.2
-pkgrel=5
+pkgrel=6
 pkgdesc="an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. https://doi.org/10.1111/1755-0998.13096"
 arch=('x86_64')
 url="https://github.com/dongzhang0725/PhyloSuite"

BioArchLinux/phylosuite/lilac.yaml

@@ -6,3 +6,4 @@ update_on:
   - source: github
     github: dongzhang0725/PhyloSuite
     use_latest_release: true
+  - alias: libcrypto

BioArchLinux/python2/PKGBUILD

@@ -6,7 +6,7 @@
 
 pkgname=python2
 pkgver=2.7.18
-pkgrel=4
+pkgrel=5
 _pybasever=2.7
 pkgdesc="A high-level scripting language"
 arch=('x86_64')

BioArchLinux/python2/lilac.yaml

@@ -11,3 +11,4 @@ post_build_script: |
 update_on:
   - source: cmd
     cmd: curl -sS https://www.python.org/downloads/ | grep 'class="release-number"' | sed 's/</ /g' | awk '{print$5}' | grep '2\.[0-9]' | head -n 1
+  - alias: libssl

BioArchLinux/qt4/PKGBUILD

@@ -5,7 +5,7 @@
 
 pkgname=qt4
 pkgver=4.8.7
-pkgrel=40
+pkgrel=41
 arch=(i686 x86_64)
 url="https://www.qt.io"
 license=(GPL3 LGPL FDL custom)

BioArchLinux/qt4/lilac.yaml

@@ -5,6 +5,5 @@ build_prefix: extra-x86_64
 update_on:
   - source: cmd
     cmd: curl -sS https://download.qt.io/archive/qt/4.8/ | grep 'href="4.' | sed 's/\// /g' | sed 's/>/ /g' | awk '{print $10}' | head -n 1
+  - alias: libssl
 time_limit_hours: 6
-
-

BioArchLinux/r-hdf5array/PKGBUILD

@@ -5,7 +5,7 @@ _pkgname=HDF5Array
 _pkgver=1.26.0
 pkgname=r-${_pkgname,,}
 pkgver=1.26.0
-pkgrel=1
+pkgrel=2
 pkgdesc='HDF5 backend for DelayedArray objects'
 arch=('x86_64')
 url="https://bioconductor.org/packages/${_pkgname}"

BioArchLinux/r-hdf5array/lilac.yaml

@@ -15,3 +15,4 @@ update_on:
   source: regex
   url: https://bioconductor.org/packages/HDF5Array
 - alias: r
+- alias: libcrypto

BioArchLinux/r-rserve/PKGBUILD

@@ -5,7 +5,7 @@ _pkgname=Rserve
 _pkgver=1.8-10
 pkgname=r-${_pkgname,,}
 pkgver=1.8.10
-pkgrel=4
+pkgrel=5
 pkgdesc='Binary R server'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"

BioArchLinux/r-rserve/lilac.yaml

@@ -6,3 +6,4 @@ update_on:
   source: regex
   url: https://cran.r-project.org/package=Rserve
 - alias: r
+- alias: libssl

BioArchLinux/r-s2/PKGBUILD

@@ -5,7 +5,7 @@ _pkgname=s2
 _pkgver=1.1.0
 pkgname=r-${_pkgname,,}
 pkgver=1.1.0
-pkgrel=2
+pkgrel=3
 pkgdesc='Spherical Geometry Operators Using the S2 Geometry Library'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"

BioArchLinux/r-s2/lilac.yaml

@@ -10,3 +10,4 @@ update_on:
   source: regex
   url: https://cran.r-project.org/package=s2
 - alias: r
+- alias: libcrypto

BioArchLinux/seqlib/PKGBUILD

@@ -1,6 +1,6 @@
 pkgname=seqlib
 pkgver=1.2.0
-pkgrel=3
+pkgrel=4
 pkgdesc="C++ htslib/bwa-mem/fermi interface for interrogating sequence data"
 arch=('i686' 'x86_64')
 url="https://github.com/walaj/SeqLib"

BioArchLinux/seqlib/lilac.yaml

@@ -14,3 +14,4 @@ update_on:
   - alias: alpm-lilac
     alpm: htslib
     strip_release: true
+  - alias: libcrypto

BioArchLinux/shapeit4/PKGBUILD

@@ -1,7 +1,7 @@
 # Maintainer: Ramiro Magno <ramiro dot magno at gmail.com>
 pkgname=shapeit4
 pkgver=4.2.2
-pkgrel=3
+pkgrel=4
 pkgdesc="Segmented HAPlotype Estimation and Imputation Tools"
 arch=('i686' 'x86_64')
 url="https://odelaneau.github.io/shapeit4/"
@@ -25,11 +25,11 @@ build() {
 
 package() {
 	cd "$pkgname-$pkgver"
-	
+
 	# Binaries
 	install -Dm755 bin/shapeit4.2 "${pkgdir}/usr/bin/shapeit4"
 	install -Dm755 tools/bingraphsample/bin/bingraphsample "${pkgdir}/usr/bin/bingraphsample"
-	
+
 	# Example data
 	mkdir -p "${pkgdir}/usr/share/${pkgname}"
 	install -Dm644 test/*.gmap.gz "${pkgdir}/usr/share/${pkgname}/"
@@ -38,4 +38,3 @@ package() {
 	install -Dm644 test/*.bcf "${pkgdir}/usr/share/${pkgname}/"
 	install -Dm644 test/*.bcf.csi "${pkgdir}/usr/share/${pkgname}/"
 }
-

BioArchLinux/shapeit4/lilac.yaml

@@ -13,6 +13,7 @@ update_on:
   - alias: alpm-lilac
     alpm: seqlib
     strip_release: true
+  - alias: libssl
 repo_depends:
   - htslib
   - seqlib