BioArchLinux/Packages
2
0
Fork 0
mirror of https://github.com/BioArchLinux/Packages.git synced 2025-03-10 12:02:42 +00:00
Code Issues Projects Releases Packages Wiki Activity

fix

Browse source
This commit is contained in:
Kuoi 2022-03-26 22:10:26 +00:00
parent ea47154f75
commit 934f56b2a5
2 changed files with 14 additions and 32 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

23
BioArchLinux/raxml-ng-mpi/PKGBUILD
View file

@ -10,29 +10,20 @@ arch=('x86_64')
license=('AGPL3')
depends=('gcc-libs' 'openmpi' 'cuda')
makedepends=('bison' 'make' 'cmake' 'flex' 'gmp' 'gtest' 'git')
source=("https://github.com/amkozlov/raxml-ng/archive/refs/tags/${pkgver}.zip")
sha256sums=('2d2d4143c50b86e40cfc9ecb328e96b2a68a166001433bf939a0c38048257d34')
prepare() {
cd "${srcdir}/raxml-ng-${pkgver}/libs"
git clone git@github.com:amkozlov/terraphast-one.git
rm -rf terraphast
mv terraphast-one terraphast
git clone git@github.com:ddarriba/pll-modules.git
cd pll-modules/libs/
rm -rf libpll
git clone git@github.com:xflouris/libpll-2.git
mv libpll-2 libpll
cp libpll/src/pll.h pll.h
source=("git+https://github.com/amkozlov/raxml-ng.git#tag=${pkgver}")
sha256sums=('SKIP')
prepare(){
cd ${srcdir}/raxml-ng
git submodule update --init --recursive
}
build(){
cd "${srcdir}"/raxml-ng-${pkgver}
cd "${srcdir}"/raxml-ng
mkdir -p build
cd build
cmake -DUSE_MPI=ON ..
make
}
package() {
cd ${srcdir}/raxml-ng-${pkgver}/bin
cd ${srcdir}/raxml-ng/bin
install -Dm755 $pkgname "${pkgdir}/usr/bin/${pkgname}"
}

23
BioArchLinux/raxml-ng/PKGBUILD
View file

@ -10,29 +10,20 @@ arch=('x86_64')
license=('AGPL3')
depends=('gcc-libs')
makedepends=('bison' 'make' 'cmake' 'flex' 'gmp' 'gtest' 'git')
source=("https://github.com/amkozlov/raxml-ng/archive/refs/tags/${pkgver}.zip")
sha256sums=('2d2d4143c50b86e40cfc9ecb328e96b2a68a166001433bf939a0c38048257d34')
prepare() {
cd "${srcdir}/raxml-ng-${pkgver}/libs"
git clone git@github.com:amkozlov/terraphast-one.git
rm -rf terraphast
mv terraphast-one terraphast
git clone git@github.com:ddarriba/pll-modules.git
cd pll-modules/libs/
rm -rf libpll
git clone git@github.com:xflouris/libpll-2.git
mv libpll-2 libpll
cp libpll/src/pll.h pll.h
source=("git+https://github.com/amkozlov/raxml-ng.git#tag=${pkgver}")
sha256sums=('SKIP')
prepare(){
cd ${srcdir}/raxml-ng
git submodule update --init --recursive
}
build(){
cd "${srcdir}"/raxml-ng-${pkgver}
cd "${srcdir}"/raxml-ng
mkdir -p build
cd build
cmake ..
make
}
package() {
cd ${srcdir}/raxml-ng-${pkgver}/bin
cd ${srcdir}/raxml-ng/bin
install -Dm755 $pkgname "${pkgdir}/usr/bin/${pkgname}"
}