diff --git a/BioArchLinux/r-escher/PKGBUILD b/BioArchLinux/r-escher/PKGBUILD new file mode 100644 index 0000000000..7ab1dd2af7 --- /dev/null +++ b/BioArchLinux/r-escher/PKGBUILD @@ -0,0 +1,40 @@ +# Maintainer: Pekka Ristola + +_pkgname=escheR +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Unified multi-dimensional visualizations with Gestalt principles" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(MIT) +depends=( + r-ggplot2 + r-rlang + r-spatialexperiment + r-spatiallibd + r-summarizedexperiment +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-stexampledata +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('df1ed86f7963992371c853e9b05284b7') +sha256sums=('7db6d150e9654adfdd46871a50d8c24fbe808cf16b36ee9f77e3677cbbcff45a') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" +} diff --git a/BioArchLinux/r-escher/lilac.py b/BioArchLinux/r-escher/lilac.py new file mode 100644 index 0000000000..b5cdb057c5 --- /dev/null +++ b/BioArchLinux/r-escher/lilac.py @@ -0,0 +1,14 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build(_G) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-escher/lilac.yaml b/BioArchLinux/r-escher/lilac.yaml new file mode 100644 index 0000000000..9b9ea15de0 --- /dev/null +++ b/BioArchLinux/r-escher/lilac.yaml @@ -0,0 +1,16 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-ggplot2 +- r-rlang +- r-spatialexperiment +- r-spatiallibd +- r-summarizedexperiment +update_on: +- source: rpkgs + pkgname: escheR + repo: bioc + md5: true +- alias: r