From 96078f6435759e0f0bd26db365c1567afee39f06 Mon Sep 17 00:00:00 2001
From: Butui Hu <hot123tea123@gmail.com>
Date: Tue, 5 Jul 2022 11:40:35 +0800
Subject: [PATCH] r-puma: fix #38

---
 {fail => BioArchLinux}/r-puma/PKGBUILD   | 9 +++++++--
 {fail => BioArchLinux}/r-puma/lilac.py   | 0
 {fail => BioArchLinux}/r-puma/lilac.yaml | 0
 3 files changed, 7 insertions(+), 2 deletions(-)
 rename {fail => BioArchLinux}/r-puma/PKGBUILD (71%)
 rename {fail => BioArchLinux}/r-puma/lilac.py (100%)
 rename {fail => BioArchLinux}/r-puma/lilac.yaml (100%)

diff --git a/fail/r-puma/PKGBUILD b/BioArchLinux/r-puma/PKGBUILD
similarity index 71%
rename from fail/r-puma/PKGBUILD
rename to BioArchLinux/r-puma/PKGBUILD
index 53e9e07d10..a853c757fb 100644
--- a/fail/r-puma/PKGBUILD
+++ b/BioArchLinux/r-puma/PKGBUILD
@@ -1,7 +1,7 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=puma
-_pkgver=3.36.0
+_pkgver=3.38.0
 pkgname=r-${_pkgname,,}
 pkgver=${_pkgver//[:-]/.}
 pkgrel=1
@@ -27,9 +27,14 @@ optdepends=(
   r-snow
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('a')
+sha256sums=('2b2c41a391f352854b0a303a9861c3806078867bb626c65d2405143964b17e5b')
+
+prepare() {
+  echo "CFLAGS=-march=x86-64 -mtune=generic -O2 -pipe -fno-plt -fexceptions -Wp,-D_FORTIFY_SOURCE=2 -Wformat -Werror=format-security -fstack-clash-protection -fcf-protection" > "${srcdir}/Makevars"
+}
 
 build() {
+  R_MAKEVARS_USER="${srcdir}/Makevars" \
   R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
 }
 
diff --git a/fail/r-puma/lilac.py b/BioArchLinux/r-puma/lilac.py
similarity index 100%
rename from fail/r-puma/lilac.py
rename to BioArchLinux/r-puma/lilac.py
diff --git a/fail/r-puma/lilac.yaml b/BioArchLinux/r-puma/lilac.yaml
similarity index 100%
rename from fail/r-puma/lilac.yaml
rename to BioArchLinux/r-puma/lilac.yaml