mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
delete useless packages
This commit is contained in:
Kuoi
parent
7f159ee7cc
commit
96ba30199f
90 changed files with 0 additions and 1955 deletions
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@ -1,48 +0,0 @@
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=AnnotationDbi
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_pkgver=1.56.2
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Manipulation of SQLite-based annotations in Bioconductor'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
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r
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r-biobase
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r-biocgenerics
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r-dbi
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r-iranges
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r-keggrest
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r-rsqlite
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r-s4vectors
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)
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optdepends=(
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r-annotationforge
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r-biocstyle
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r-ensdb.hsapiens.v75
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r-go.db
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r-graph
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r-hgu95av2.db
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r-knitr
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r-org.at.tair.db
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r-org.hs.eg.db
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||||
r-org.sc.sgd.db
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r-reactome.db
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r-runit
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r-txdb.hsapiens.ucsc.hg19.knowngene
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +0,0 @@
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|||
#!/usr/bin/env python3
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from lilaclib import *
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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def post_build():
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git_pkgbuild_commit()
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@ -1,16 +0,0 @@
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build_prefix: extra-x86_64
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maintainers:
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||||
- github: starsareintherose
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email: starsareintherose@outlook.com
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repo_depends:
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- r-biobase
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- r-biocgenerics
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- r-dbi
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- r-iranges
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- r-keggrest
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- r-rsqlite
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- r-s4vectors
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update_on:
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- regex: AnnotationDbi_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/AnnotationDbi
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@ -1,31 +0,0 @@
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=askpass
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_pkgver=1.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Safe Password Entry for R, Git, and SSH'
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arch=('x86_64')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('MIT')
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depends=(
|
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r
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r-sys
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)
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optdepends=(
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r-testthat
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +0,0 @@
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#!/usr/bin/env python3
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from lilaclib import *
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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def post_build():
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git_pkgbuild_commit()
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|
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@ -1,10 +0,0 @@
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build_prefix: extra-x86_64
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maintainers:
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- github: starsareintherose
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email: starsareintherose@outlook.com
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repo_depends:
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- r-sys
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update_on:
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- regex: askpass_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=askpass
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|
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@ -1,30 +0,0 @@
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=assertthat
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_pkgver=0.2.1
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Easy Pre and Post Assertions'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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depends=(
|
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r
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)
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optdepends=(
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r-covr
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r-testthat
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +0,0 @@
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#!/usr/bin/env python3
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from lilaclib import *
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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def post_build():
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git_pkgbuild_commit()
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@ -1,8 +0,0 @@
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build_prefix: extra-x86_64
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maintainers:
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- github: starsareintherose
|
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email: starsareintherose@outlook.com
|
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update_on:
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- regex: assertthat_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=assertthat
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@ -1,34 +0,0 @@
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=Biobase
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_pkgver=2.54.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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pkgdesc='Biobase: Base functions for Bioconductor'
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arch=('x86_64')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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depends=(
|
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r
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r-biocgenerics
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)
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optdepends=(
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r-all
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r-golubesets
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r-runit
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r-tkwidgets
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r-tools
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('a')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +0,0 @@
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#!/usr/bin/env python3
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from lilaclib import *
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|
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def pre_build():
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for line in edit_file('PKGBUILD'):
|
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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def post_build():
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git_pkgbuild_commit()
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|
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@ -1,10 +0,0 @@
|
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build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
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||||
update_on:
|
||||
- regex: Biobase_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/Biobase
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||||
|
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@ -1,41 +0,0 @@
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|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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||||
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_pkgname=BiocFileCache
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_pkgver=2.2.0
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pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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||||
pkgrel=1
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||||
pkgdesc='Manage Files Across Sessions'
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||||
arch=('any')
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||||
url="https://bioconductor.org/packages/${_pkgname}"
|
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license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
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r-curl
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||||
r-dbi
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||||
r-dbplyr
|
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r-dplyr
|
||||
r-filelock
|
||||
r-httr
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||||
r-rappdirs
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r-rsqlite
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||||
)
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optdepends=(
|
||||
r-biocstyle
|
||||
r-knitr
|
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r-rmarkdown
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||||
r-rtracklayer
|
||||
r-testthat
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||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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|
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@ -1,12 +0,0 @@
|
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#!/usr/bin/env python3
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||||
from lilaclib import *
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|
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def pre_build():
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for line in edit_file('PKGBUILD'):
|
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if line.startswith('_pkgver='):
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||||
line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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def post_build():
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git_pkgbuild_commit()
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|
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@ -1,17 +0,0 @@
|
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build_prefix: extra-x86_64
|
||||
maintainers:
|
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- github: starsareintherose
|
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email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-curl
|
||||
- r-dbi
|
||||
- r-dbplyr
|
||||
- r-dplyr
|
||||
- r-filelock
|
||||
- r-httr
|
||||
- r-rappdirs
|
||||
- r-rsqlite
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||||
update_on:
|
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- regex: BiocFileCache_([\d._-]+).tar.gz
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source: regex
|
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url: https://bioconductor.org/packages/BiocFileCache
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|
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@ -1,43 +0,0 @@
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
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_pkgname=BiocGenerics
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_pkgver=0.40.0
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||||
pkgname=r-${_pkgname,,}
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pkgver=${_pkgver//[:-]/.}
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pkgrel=1
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||||
pkgdesc='S4 generic functions used in Bioconductor'
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||||
arch=('any')
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||||
url="https://bioconductor.org/packages/${_pkgname}"
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||||
license=('Artistic2.0')
|
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depends=(
|
||||
r
|
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)
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optdepends=(
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r-affy
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r-affyplm
|
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r-annotate
|
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r-annotationdbi
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r-biobase
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||||
r-biostrings
|
||||
r-delayedarray
|
||||
r-deseq2
|
||||
r-flowclust
|
||||
r-genomicranges
|
||||
r-iranges
|
||||
r-msnbase
|
||||
r-rsamtools
|
||||
r-runit
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||||
r-s4vectors
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||||
)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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||||
}
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||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +0,0 @@
|
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#!/usr/bin/env python3
|
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from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
update_on:
|
||||
- regex: BiocGenerics_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/BiocGenerics
|
||||
|
|
@ -1,34 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=BiocIO
|
||||
_pkgver=1.4.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Standard Input and Output for Bioconductor Packages'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-s4vectors
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
r-knitr
|
||||
r-rmarkdown
|
||||
r-testthat
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,11 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-s4vectors
|
||||
update_on:
|
||||
- regex: BiocIO_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/BiocIO
|
||||
|
|
@ -1,53 +0,0 @@
|
|||
# system requirements: C++11
|
||||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=BiocParallel
|
||||
_pkgver=1.28.3
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Bioconductor facilities for parallel evaluation'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
depends=(
|
||||
r
|
||||
r-bh
|
||||
r-futile.logger
|
||||
r-snow
|
||||
gcc
|
||||
)
|
||||
optdepends=(
|
||||
r-batchjobs
|
||||
r-batchtools
|
||||
r-bbmisc
|
||||
r-biocgenerics
|
||||
r-biocstyle
|
||||
r-codetools
|
||||
r-data.table
|
||||
r-doparallel
|
||||
r-foreach
|
||||
r-genomicalignments
|
||||
r-genomicranges
|
||||
r-knitr
|
||||
r-rmpi
|
||||
r-rnaseqdata.hnrnpc.bam.chr14
|
||||
r-rsamtools
|
||||
r-runit
|
||||
r-shortread
|
||||
r-tools
|
||||
r-txdb.hsapiens.ucsc.hg19.knowngene
|
||||
r-variantannotation
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-bh
|
||||
- r-futile.logger
|
||||
- r-snow
|
||||
update_on:
|
||||
- regex: BiocParallel_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/BiocParallel
|
||||
|
|
@ -1,42 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=biomaRt
|
||||
_pkgver=2.50.1
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Interface to BioMart databases (i.e. Ensembl)'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-annotationdbi
|
||||
r-biocfilecache
|
||||
r-digest
|
||||
r-httr
|
||||
r-progress
|
||||
r-rappdirs
|
||||
r-stringr
|
||||
r-xml
|
||||
r-xml2
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
r-knitr
|
||||
r-mockery
|
||||
r-rmarkdown
|
||||
r-testthat
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,18 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-annotationdbi
|
||||
- r-biocfilecache
|
||||
- r-digest
|
||||
- r-httr
|
||||
- r-progress
|
||||
- r-rappdirs
|
||||
- r-stringr
|
||||
- r-xml
|
||||
- r-xml2
|
||||
update_on:
|
||||
- regex: biomaRt_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/biomaRt
|
||||
|
|
@ -1,47 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=Biostrings
|
||||
_pkgver=2.62.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Efficient manipulation of biological strings'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-crayon
|
||||
r-genomeinfodb
|
||||
r-iranges
|
||||
r-s4vectors
|
||||
r-xvector
|
||||
)
|
||||
optdepends=(
|
||||
r-affy
|
||||
r-affydata
|
||||
r-bsgenome
|
||||
r-bsgenome.celegans.ucsc.ce2
|
||||
r-bsgenome.dmelanogaster.ucsc.dm3
|
||||
r-bsgenome.hsapiens.ucsc.hg18
|
||||
r-drosophila2probe
|
||||
r-genomicfeatures
|
||||
r-hgu133aprobe
|
||||
r-hgu95av2cdf
|
||||
r-hgu95av2probe
|
||||
r-rmpi
|
||||
r-runit
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,15 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-crayon
|
||||
- r-genomeinfodb
|
||||
- r-iranges
|
||||
- r-s4vectors
|
||||
- r-xvector
|
||||
update_on:
|
||||
- regex: Biostrings_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/Biostrings
|
||||
|
|
@ -1,53 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=BSgenome
|
||||
_pkgver=1.62.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Software infrastructure for efficient representation of full genomes and their SNPs'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-biostrings
|
||||
r-genomeinfodb
|
||||
r-genomicranges
|
||||
r-iranges
|
||||
r-matrixstats
|
||||
r-rsamtools
|
||||
r-rtracklayer
|
||||
r-s4vectors
|
||||
r-xvector
|
||||
)
|
||||
optdepends=(
|
||||
r-biobase
|
||||
r-biocmanager
|
||||
r-bsgenome.celegans.ucsc.ce2
|
||||
r-bsgenome.hsapiens.ncbi.grch38
|
||||
r-bsgenome.hsapiens.ucsc.hg38
|
||||
r-bsgenome.hsapiens.ucsc.hg38.masked
|
||||
r-bsgenome.mmusculus.ucsc.mm10
|
||||
r-bsgenome.rnorvegicus.ucsc.rn5
|
||||
r-bsgenome.scerevisiae.ucsc.saccer1
|
||||
r-hgu95av2probe
|
||||
r-runit
|
||||
r-snplocs.hsapiens.dbsnp144.grch38
|
||||
r-txdb.hsapiens.ucsc.hg38.knowngene
|
||||
r-txdb.mmusculus.ucsc.mm10.knowngene
|
||||
r-xtrasnplocs.hsapiens.dbsnp144.grch38
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,19 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-biostrings
|
||||
- r-genomeinfodb
|
||||
- r-genomicranges
|
||||
- r-iranges
|
||||
- r-matrixstats
|
||||
- r-rsamtools
|
||||
- r-rtracklayer
|
||||
- r-s4vectors
|
||||
- r-xvector
|
||||
update_on:
|
||||
- regex: BSgenome_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/BSgenome
|
||||
|
|
@ -1,26 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=BufferedMatrix
|
||||
_pkgver=1.58.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='A matrix data storage object held in temporary files'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('LGPL')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
update_on:
|
||||
- regex: BufferedMatrix_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/BufferedMatrix
|
||||
|
|
@ -1,31 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=BufferedMatrixMethods
|
||||
_pkgver=1.58.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Microarray Data related methods that utlize BufferedMatrix objects'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('GPL')
|
||||
depends=(
|
||||
r
|
||||
r-bufferedmatrix
|
||||
)
|
||||
optdepends=(
|
||||
r-affy
|
||||
r-affyio
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,10 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-bufferedmatrix
|
||||
update_on:
|
||||
- regex: BufferedMatrixMethods_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/BufferedMatrixMethods
|
||||
|
|
@ -1,43 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=DelayedArray
|
||||
_pkgver=0.20.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='A unified framework for working transparently with on-disk and in-memory array-like datasets'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-iranges
|
||||
r-matrixgenerics
|
||||
r-s4vectors
|
||||
)
|
||||
optdepends=(
|
||||
r-airway
|
||||
r-biocparallel
|
||||
r-biocstyle
|
||||
r-delayedmatrixstats
|
||||
r-genefilter
|
||||
r-hdf5array
|
||||
r-knitr
|
||||
r-lobstr
|
||||
r-rmarkdown
|
||||
r-runit
|
||||
r-summarizedexperiment
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,13 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-iranges
|
||||
- r-matrixgenerics
|
||||
- r-s4vectors
|
||||
update_on:
|
||||
- regex: DelayedArray_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/DelayedArray
|
||||
|
|
@ -1,45 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=GenomeInfoDb
|
||||
_pkgver=1.30.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Utilities for manipulating chromosome names, including modifying them to follow a particular naming style'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-genomeinfodbdata
|
||||
r-iranges
|
||||
r-rcurl
|
||||
r-s4vectors
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
r-bsgenome
|
||||
r-bsgenome.celegans.ucsc.ce2
|
||||
r-bsgenome.hsapiens.ncbi.grch38
|
||||
r-bsgenome.scerevisiae.ucsc.saccer2
|
||||
r-genomicalignments
|
||||
r-genomicfeatures
|
||||
r-genomicranges
|
||||
r-knitr
|
||||
r-rsamtools
|
||||
r-runit
|
||||
r-txdb.dmelanogaster.ucsc.dm3.ensgene
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,14 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-genomeinfodbdata
|
||||
- r-iranges
|
||||
- r-rcurl
|
||||
- r-s4vectors
|
||||
update_on:
|
||||
- regex: GenomeInfoDb_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/GenomeInfoDb
|
||||
|
|
@ -1,51 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=GenomicAlignments
|
||||
_pkgver=1.30.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Representation and manipulation of short genomic alignments'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-biocparallel
|
||||
r-biostrings
|
||||
r-genomeinfodb
|
||||
r-genomicranges
|
||||
r-iranges
|
||||
r-rsamtools
|
||||
r-s4vectors
|
||||
r-summarizedexperiment
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
r-bsgenome
|
||||
r-bsgenome.dmelanogaster.ucsc.dm3
|
||||
r-bsgenome.hsapiens.ucsc.hg19
|
||||
r-deseq2
|
||||
r-edger
|
||||
r-genomicfeatures
|
||||
r-pasillabamsubset
|
||||
r-rnaseqdata.hnrnpc.bam.chr14
|
||||
r-rtracklayer
|
||||
r-runit
|
||||
r-shortread
|
||||
r-txdb.dmelanogaster.ucsc.dm3.ensgene
|
||||
r-txdb.hsapiens.ucsc.hg19.knowngene
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,18 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-biocparallel
|
||||
- r-biostrings
|
||||
- r-genomeinfodb
|
||||
- r-genomicranges
|
||||
- r-iranges
|
||||
- r-rsamtools
|
||||
- r-s4vectors
|
||||
- r-summarizedexperiment
|
||||
update_on:
|
||||
- regex: GenomicAlignments_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/GenomicAlignments
|
||||
|
|
@ -1,68 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=GenomicRanges
|
||||
_pkgver=1.46.1
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Representation and manipulation of genomic intervals'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-genomeinfodb
|
||||
r-iranges
|
||||
r-s4vectors
|
||||
r-xvector
|
||||
)
|
||||
optdepends=(
|
||||
r-annotate
|
||||
r-annotationdbi
|
||||
r-annotationhub
|
||||
r-biobase
|
||||
r-biocstyle
|
||||
r-biostrings
|
||||
r-bsgenome
|
||||
r-bsgenome.hsapiens.ucsc.hg19
|
||||
r-bsgenome.mmusculus.ucsc.mm10
|
||||
r-bsgenome.scerevisiae.ucsc.saccer2
|
||||
r-deseq2
|
||||
r-dexseq
|
||||
r-digest
|
||||
r-edger
|
||||
r-genomicalignments
|
||||
r-genomicfeatures
|
||||
r-gviz
|
||||
r-hgu95av2.db
|
||||
r-hgu95av2probe
|
||||
r-kegggraph
|
||||
r-keggrest
|
||||
r-knitr
|
||||
r-matrix
|
||||
r-pasillabamsubset
|
||||
r-rmarkdown
|
||||
r-rnaseqdata.hnrnpc.bam.chr14
|
||||
r-rsamtools
|
||||
r-rtracklayer
|
||||
r-runit
|
||||
r-summarizedexperiment
|
||||
r-txdb.athaliana.biomart.plantsmart22
|
||||
r-txdb.dmelanogaster.ucsc.dm3.ensgene
|
||||
r-txdb.hsapiens.ucsc.hg19.knowngene
|
||||
r-txdb.mmusculus.ucsc.mm10.knowngene
|
||||
r-variantannotation
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,14 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-genomeinfodb
|
||||
- r-iranges
|
||||
- r-s4vectors
|
||||
- r-xvector
|
||||
update_on:
|
||||
- regex: GenomicRanges_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/GenomicRanges
|
||||
|
|
@ -1,39 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=IRanges
|
||||
_pkgver=2.28.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Foundation of integer range manipulation in Bioconductor'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-s4vectors
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
r-bsgenome.celegans.ucsc.ce2
|
||||
r-genomicalignments
|
||||
r-genomicfeatures
|
||||
r-genomicranges
|
||||
r-pasillabamsubset
|
||||
r-rsamtools
|
||||
r-runit
|
||||
r-xvector
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,11 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-s4vectors
|
||||
update_on:
|
||||
- regex: IRanges_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/IRanges
|
||||
|
|
@ -1,37 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=jsonlite
|
||||
_pkgver=1.7.2
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='A Simple and Robust JSON Parser and Generator for R'
|
||||
arch=('x86_64')
|
||||
url="https://cran.r-project.org/package=${_pkgname}"
|
||||
license=('MIT')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
optdepends=(
|
||||
r-curl
|
||||
r-httr
|
||||
r-knitr
|
||||
r-plyr
|
||||
r-r.rsp
|
||||
r-rmarkdown
|
||||
r-sf
|
||||
r-testthat
|
||||
)
|
||||
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
update_on:
|
||||
- regex: jsonlite_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=jsonlite
|
||||
|
|
@ -1,35 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=KEGGREST
|
||||
_pkgver=1.34.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biostrings
|
||||
r-httr
|
||||
r-png
|
||||
)
|
||||
optdepends=(
|
||||
r-biocgenerics
|
||||
r-knitr
|
||||
r-markdown
|
||||
r-runit
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biostrings
|
||||
- r-httr
|
||||
- r-png
|
||||
update_on:
|
||||
- regex: KEGGREST_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/KEGGREST
|
||||
|
|
@ -1,33 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=MatrixGenerics
|
||||
_pkgver=1.6.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-matrixstats
|
||||
)
|
||||
optdepends=(
|
||||
r-delayedmatrixstats
|
||||
r-sparsematrixstats
|
||||
r-summarizedexperiment
|
||||
r-testthat
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,10 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-matrixstats
|
||||
update_on:
|
||||
- regex: MatrixGenerics_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/MatrixGenerics
|
||||
|
|
@ -1,31 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=multtest
|
||||
_pkgver=2.50.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Resampling-based multiple hypothesis testing'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('LGPL')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-biocgenerics
|
||||
)
|
||||
optdepends=(
|
||||
r-snow
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,11 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biobase
|
||||
- r-biocgenerics
|
||||
update_on:
|
||||
- regex: multtest_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/multtest
|
||||
|
|
@ -1,32 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=Rcpp
|
||||
_pkgver=1.0.7
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Seamless R and C++ Integration'
|
||||
arch=('x86_64')
|
||||
url="https://cran.r-project.org/package=${_pkgname}"
|
||||
license=('GPL')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
optdepends=(
|
||||
r-inline
|
||||
r-pkgkitten
|
||||
r-rbenchmark
|
||||
r-tinytest
|
||||
)
|
||||
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
update_on:
|
||||
- regex: Rcpp_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=Rcpp
|
||||
|
|
@ -1,33 +0,0 @@
|
|||
# system requirements: libbz2 & liblzma & libcurl (with header files), GNUmake
|
||||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=Rhtslib
|
||||
_pkgver=1.26.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='HTSlib high-throughput sequencing library as an R package'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('LGPL')
|
||||
depends=(
|
||||
r
|
||||
r-zlibbioc
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
r-knitr
|
||||
r-rmarkdown
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,10 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-zlibbioc
|
||||
update_on:
|
||||
- regex: Rhtslib_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/Rhtslib
|
||||
|
|
@ -1,49 +0,0 @@
|
|||
# system requirements: GNU make
|
||||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=Rsamtools
|
||||
_pkgver=2.10.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-biocparallel
|
||||
r-biostrings
|
||||
r-bitops
|
||||
r-genomeinfodb
|
||||
r-genomicranges
|
||||
r-iranges
|
||||
r-rhtslib
|
||||
r-s4vectors
|
||||
r-xvector
|
||||
r-zlibbioc
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
r-bsgenome.hsapiens.ucsc.hg19
|
||||
r-genomicalignments
|
||||
r-genomicfeatures
|
||||
r-rnaseqdata.hnrnpc.bam.chr14
|
||||
r-runit
|
||||
r-shortread
|
||||
r-txdb.dmelanogaster.ucsc.dm3.ensgene
|
||||
r-txdb.hsapiens.ucsc.hg18.knowngene
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,20 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-biocparallel
|
||||
- r-biostrings
|
||||
- r-bitops
|
||||
- r-genomeinfodb
|
||||
- r-genomicranges
|
||||
- r-iranges
|
||||
- r-rhtslib
|
||||
- r-s4vectors
|
||||
- r-xvector
|
||||
- r-zlibbioc
|
||||
update_on:
|
||||
- regex: Rsamtools_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/Rsamtools
|
||||
|
|
@ -1,53 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=rtracklayer
|
||||
_pkgver=1.54.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='R interface to genome annotation files and the UCSC genome browser'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-biocio
|
||||
r-biostrings
|
||||
r-genomeinfodb
|
||||
r-genomicalignments
|
||||
r-genomicranges
|
||||
r-iranges
|
||||
r-rcurl
|
||||
r-restfulr
|
||||
r-rsamtools
|
||||
r-s4vectors
|
||||
r-xml
|
||||
r-xvector
|
||||
r-zlibbioc
|
||||
)
|
||||
optdepends=(
|
||||
r-bsgenome
|
||||
r-bsgenome.hsapiens.ucsc.hg19
|
||||
r-genefilter
|
||||
r-genomicfeatures
|
||||
r-hgu133plus2.db
|
||||
r-humanstemcell
|
||||
r-limma
|
||||
r-microrna
|
||||
r-org.hs.eg.db
|
||||
r-runit
|
||||
r-txdb.hsapiens.ucsc.hg19.knowngene
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,23 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-biocio
|
||||
- r-biostrings
|
||||
- r-genomeinfodb
|
||||
- r-genomicalignments
|
||||
- r-genomicranges
|
||||
- r-iranges
|
||||
- r-rcurl
|
||||
- r-restfulr
|
||||
- r-rsamtools
|
||||
- r-s4vectors
|
||||
- r-xml
|
||||
- r-xvector
|
||||
- r-zlibbioc
|
||||
update_on:
|
||||
- regex: rtracklayer_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/rtracklayer
|
||||
|
|
@ -1,39 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=S4Vectors
|
||||
_pkgver=0.32.3
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Foundation of vector-like and list-like containers in Bioconductor'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
)
|
||||
optdepends=(
|
||||
r-biocstyle
|
||||
r-data.table
|
||||
r-delayedarray
|
||||
r-genomicranges
|
||||
r-graph
|
||||
r-iranges
|
||||
r-matrix
|
||||
r-runit
|
||||
r-shortread
|
||||
r-summarizedexperiment
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,10 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
update_on:
|
||||
- regex: S4Vectors_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/S4Vectors
|
||||
|
|
@ -1,51 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=SummarizedExperiment
|
||||
_pkgver=1.24.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='SummarizedExperiment container'
|
||||
arch=('any')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biobase
|
||||
r-biocgenerics
|
||||
r-delayedarray
|
||||
r-genomeinfodb
|
||||
r-genomicranges
|
||||
r-iranges
|
||||
r-matrixgenerics
|
||||
r-s4vectors
|
||||
)
|
||||
optdepends=(
|
||||
r-airway
|
||||
r-annotate
|
||||
r-annotationdbi
|
||||
r-biocstyle
|
||||
r-digest
|
||||
r-genomicfeatures
|
||||
r-hdf5array
|
||||
r-hgu95av2.db
|
||||
r-jsonlite
|
||||
r-knitr
|
||||
r-rhdf5
|
||||
r-rmarkdown
|
||||
r-runit
|
||||
r-testthat
|
||||
r-txdb.hsapiens.ucsc.hg19.knowngene
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,17 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biobase
|
||||
- r-biocgenerics
|
||||
- r-delayedarray
|
||||
- r-genomeinfodb
|
||||
- r-genomicranges
|
||||
- r-iranges
|
||||
- r-matrixgenerics
|
||||
- r-s4vectors
|
||||
update_on:
|
||||
- regex: SummarizedExperiment_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/SummarizedExperiment
|
||||
|
|
@ -1,35 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=XVector
|
||||
_pkgver=0.34.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Foundation of external vector representation and manipulation in Bioconductor'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
r-biocgenerics
|
||||
r-iranges
|
||||
r-s4vectors
|
||||
r-zlibbioc
|
||||
)
|
||||
optdepends=(
|
||||
r-biostrings
|
||||
r-drosophila2probe
|
||||
r-runit
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,13 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
repo_depends:
|
||||
- r-biocgenerics
|
||||
- r-iranges
|
||||
- r-s4vectors
|
||||
- r-zlibbioc
|
||||
update_on:
|
||||
- regex: XVector_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/XVector
|
||||
|
|
@ -1,26 +0,0 @@
|
|||
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
|
||||
|
||||
_pkgname=zlibbioc
|
||||
_pkgver=1.40.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=${_pkgver//[:-]/.}
|
||||
pkgrel=1
|
||||
pkgdesc='An R packaged zlib-1.2.5'
|
||||
arch=('x86_64')
|
||||
url="https://bioconductor.org/packages/${_pkgname}"
|
||||
license=('Artistic2.0')
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('a')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
@ -1,12 +0,0 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
build_prefix: extra-x86_64
|
||||
maintainers:
|
||||
- github: starsareintherose
|
||||
email: starsareintherose@outlook.com
|
||||
update_on:
|
||||
- regex: zlibbioc_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://bioconductor.org/packages/zlibbioc
|
||||
Loading…
Add table
Reference in a new issue