From 97f78fab8f09f58f58d0ec2c41a64ca3f17bd2a5 Mon Sep 17 00:00:00 2001
From: Kuoi <starsareintherose@outlook.com>
Date: Mon, 29 Aug 2022 19:48:32 +0100
Subject: [PATCH] iqtree-mpi: init

---
 BioArchLinux/iqtree-mpi/PKGBUILD   | 32 ++++++++++++++++++++++++++++++
 BioArchLinux/iqtree-mpi/lilac.py   | 12 +++++++++++
 BioArchLinux/iqtree-mpi/lilac.yaml | 12 +++++++++++
 3 files changed, 56 insertions(+)
 create mode 100644 BioArchLinux/iqtree-mpi/PKGBUILD
 create mode 100644 BioArchLinux/iqtree-mpi/lilac.py
 create mode 100644 BioArchLinux/iqtree-mpi/lilac.yaml

diff --git a/BioArchLinux/iqtree-mpi/PKGBUILD b/BioArchLinux/iqtree-mpi/PKGBUILD
new file mode 100644
index 0000000000..47784db073
--- /dev/null
+++ b/BioArchLinux/iqtree-mpi/PKGBUILD
@@ -0,0 +1,32 @@
+# Maintainer: Guoyi Zhang <myname at malacology dot net>
+
+pkgname=iqtree-mpi
+_pkgname=iqtree2
+pkgver=2.1.2
+pkgrel=1
+pkgdesc="Efficient phylogenomic software by maximum likelihood; multicore version (OMP). https://doi.org/10.1093/molbev/msaa015"
+arch=(x86_64)
+url="https://github.com/iqtree/iqtree2"
+license=('GPL2')
+depends=('boost' 'eigen' 'gcc-libs' 'zlib' 'openmpi' 'nvidia-utils')
+makedepends=('cmake' 'make' 'gcc' 'git')
+source=("git+$url.git#tag=v${pkgver}")
+md5sums=('SKIP')
+
+prepare() {
+  cd $_pkgname
+  git submodule update --init --recursive
+}
+
+build() {
+  cd $_pkgname
+  mkdir -p build && cd build
+  cmake -DIQTREE_FLAGS=mpi ..
+  make
+}
+
+package() {
+  cd $_pkgname/build 
+  chmod +x $_pkgname-mpi
+  install -Dm 755 $_pkgname-mpi ${pkgdir}/usr/bin/$pkgname
+}
diff --git a/BioArchLinux/iqtree-mpi/lilac.py b/BioArchLinux/iqtree-mpi/lilac.py
new file mode 100644
index 0000000000..c6d1de3db7
--- /dev/null
+++ b/BioArchLinux/iqtree-mpi/lilac.py
@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
+  update_aur_repo()
diff --git a/BioArchLinux/iqtree-mpi/lilac.yaml b/BioArchLinux/iqtree-mpi/lilac.yaml
new file mode 100644
index 0000000000..c87a927e27
--- /dev/null
+++ b/BioArchLinux/iqtree-mpi/lilac.yaml
@@ -0,0 +1,12 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+update_on:
+  - source: github
+    github: iqtree/iqtree2
+    use_latest_release: true
+    prefix: 'v'
+#repo_depends:
+#  - libstdc++5
+time_limit_hours: 6