fix the r-sponge depends

BioArchLinux/r-cvms/PKGBUILD

@@ -0,0 +1,60 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=cvms
+_pkgver=1.3.3
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Cross-Validation for Model Selection'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-checkmate
+  r-data.table
+  r-dplyr
+  r-ggplot2
+  r-lifecycle
+  r-lme4
+  r-mumin
+  r-parameters
+  r-plyr
+  r-proc
+  r-purrr
+  r-rearrr
+  r-recipes
+  r-rlang
+  r-stringr
+  r-tibble
+  r-tidyr
+)
+optdepends=(
+  r-auc
+  r-covr
+  r-e1071
+  r-furrr
+  r-ggimage
+  r-ggnewscale
+  r-groupdata2
+  r-knitr
+  r-nnet
+  r-randomforest
+  r-rmarkdown
+  r-rsvg
+  r-testthat
+  r-xpectr
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-cvms/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-cvms/lilac.yaml

@@ -0,0 +1,26 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+  email: starsareintherose@outlook.com
+repo_depends:
+- r-checkmate
+- r-data.table
+- r-dplyr
+- r-ggplot2
+- r-lifecycle
+- r-lme4
+- r-mumin
+- r-parameters
+- r-plyr
+- r-proc
+- r-purrr
+- r-rearrr
+- r-recipes
+- r-rlang
+- r-stringr
+- r-tibble
+- r-tidyr
+update_on:
+- regex: cvms_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=cvms

BioArchLinux/r-metbrewer/PKGBUILD

@@ -0,0 +1,27 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=MetBrewer
+_pkgver=0.2.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Color Palettes Inspired by Works at the Metropolitan Museum of Art'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('CC0')
+depends=(
+  r
+  r-ggplot2
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-metbrewer/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-metbrewer/lilac.yaml

@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+  email: starsareintherose@outlook.com
+repo_depends:
+- r-ggplot2
+update_on:
+- regex: MetBrewer_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=MetBrewer

BioArchLinux/r-rearrr/PKGBUILD

@@ -0,0 +1,44 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=rearrr
+_pkgver=0.3.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Rearranging Data'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-checkmate
+  r-dplyr
+  r-lifecycle
+  r-plyr
+  r-purrr
+  r-r6
+  r-rlang
+  r-tibble
+)
+optdepends=(
+  r-covr
+  r-ggplot2
+  r-knitr
+  r-plotly
+  r-testthat
+  r-tidyr
+  r-xpectr
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-rearrr/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-rearrr/lilac.yaml

@@ -0,0 +1,17 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+  email: starsareintherose@outlook.com
+repo_depends:
+- r-checkmate
+- r-dplyr
+- r-lifecycle
+- r-plyr
+- r-purrr
+- r-r6
+- r-rlang
+- r-tibble
+update_on:
+- regex: rearrr_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=rearrr

BioArchLinux/r-sponge/PKGBUILD

@@ -22,12 +22,27 @@ depends=(
   r-iterators
   r-logging
   r-ppcor
+  r-tidyverse
+  r-caret
+  r-dplyr
+  r-biomart
+  r-randomforest
+  r-ggridges
+  r-cvms
+  r-mirbaseconverter
+  r-complexheatmap
+  r-ggplot2
+  r-metbrewer
+  r-rlang
+  r-tnet
+  r-ggpubr
+  r-stringr
+  r-tidyr
 )
 optdepends=(
   r-bigmemory
   r-digest
   r-doparallel
-  r-ggplot2
   r-ggrepel
   r-gridextra
   r-knitr

BioArchLinux/r-sponge/lilac.yaml

@@ -14,6 +14,22 @@ repo_depends:
 - r-iterators
 - r-logging
 - r-ppcor
+- r-tidyverse
+- r-caret
+- r-dplyr
+- r-biomart
+- r-randomforest
+- r-ggridges
+- r-cvms
+- r-mirbaseconverter
+- r-complexheatmap
+- r-ggplot2
+- r-metbrewer
+- r-rlang
+- r-tnet
+- r-ggpubr
+- r-stringr
+- r-tidyr
 update_on:
 - regex: SPONGE_([\d._-]+).tar.gz
   source: regex

BioArchLinux/r-tnet/PKGBUILD

@@ -0,0 +1,27 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=tnet
+_pkgver=3.0.16
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//[:-]/.}
+pkgrel=1
+pkgdesc='Weighted, Two-Mode, and Longitudinal Networks Analysis'
+arch=('any')
+url="https://cran.r-project.org/package=${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-igraph
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et:

BioArchLinux/r-tnet/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+def pre_build():
+    for line in edit_file('PKGBUILD'):
+        if line.startswith('_pkgver='):
+            line = f'_pkgver={_G.newver}'
+        print(line)
+    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-tnet/lilac.yaml

@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: starsareintherose
+  email: starsareintherose@outlook.com
+repo_depends:
+- r-igraph
+update_on:
+- regex: tnet_([\d._-]+).tar.gz
+  source: regex
+  url: https://cran.r-project.org/package=tnet