mirror of
https://github.com/BioArchLinux/Packages.git
synced 2025-03-10 12:02:42 +00:00
r-*: use metadata checks for several packages
This commit is contained in:
Pekka Ristola
parent
acb221345e
commit
98740578fb
21 changed files with 176 additions and 137 deletions
|
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@ -3,12 +3,12 @@
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_pkgname=BiocBaseUtils
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_pkgver=1.4.0
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pkgname=r-${_pkgname,,}
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pkgver=1.4.0
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='General utility functions for developing Bioconductor packages'
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arch=('any')
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url="https://bioconductor.org/packages/${_pkgname}"
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license=('Artistic2.0')
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pkgdesc="General utility functions for developing Bioconductor packages"
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arch=(any)
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url="https://bioconductor.org/packages/$_pkgname"
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license=(Artistic2.0)
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depends=(
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r
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)
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@ -19,14 +19,15 @@ optdepends=(
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r-tinytest
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)
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source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('e588788262936ed9cc83ab198ec4a0e3b95f92af6cd443a66d1b6c9827fa32a1')
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md5sums=('23ed1406ff70165a763ca2040c46353e')
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b2sums=('c48bc9b7fc906b3f7ed5850623abf66ea7ea18858ff30bc0f35c43f027856d6722f7d6c249b249a7b6e07f29b8bd9166c31dd4a5a67f62e18a5fd9c7189d04b3')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,9 +1,14 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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update_aur_repo()
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@ -1,11 +1,10 @@
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build_prefix: extra-x86_64
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maintainers:
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- github: sukanka
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email: su975853527@gmail.com
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post_build_script: |
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git_pkgbuild_commit()
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update_aur_repo()
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- github: sukanka
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email: su975853527@gmail.com
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update_on:
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- regex: BiocBaseUtils_([\d._-]+).tar.gz
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source: regex
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url: https://bioconductor.org/packages/BiocBaseUtils
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- source: rpkgs
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pkgname: BiocBaseUtils
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repo: bioc
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md5: true
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- alias: r
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@ -3,12 +3,12 @@
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_pkgname=filelock
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_pkgver=1.0.3
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pkgname=r-${_pkgname,,}
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pkgver=1.0.3
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Portable File Locking'
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arch=('x86_64')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('MIT')
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pkgdesc="Portable File Locking"
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arch=(x86_64)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(MIT)
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depends=(
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r
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)
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@ -18,15 +18,18 @@ optdepends=(
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r-testthat
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('2dcd0ec453f5ec4d96f69b0c472569d57d3c5f9956a82a48492ee02f12071137')
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md5sums=('db8ce0e4e54049a51875108aa996bbdb')
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b2sums=('c36a82cc7c4f0720e84b400b3c800c0719ed1a526ea41ec9cad06c00371b5058ad5b08478c2da67b649bdee1acfeab2aaf51f1abb01b55ca639863bc8104aee0')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: filelock_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=filelock
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- source: rpkgs
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pkgname: filelock
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repo: cran
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md5: true
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- alias: r
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@ -3,12 +3,12 @@
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_pkgname=import
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_pkgver=1.3.1
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pkgname=r-${_pkgname,,}
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pkgver=1.3.1
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='An Import Mechanism for R'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('MIT')
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pkgdesc="An Import Mechanism for R"
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arch=(any)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(MIT)
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depends=(
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r
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)
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@ -19,15 +19,18 @@ optdepends=(
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r-testthat
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('587ae4ee09c3d264d2f25b912cc326136e102e0f238b10c0719dba500eaaf3c0')
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md5sums=('0e1640048136d1b5cb24025337698a23')
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b2sums=('0145cab3a62ef017e4427960580415c41c08a747f6a95782a07025eec27e30c624e25d193ac3e973e1fffa7c332976ea73c4f0e1a6f57460037708f366086090')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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install -d "$pkgdir/usr/share/licenses/$pkgname"
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ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: import_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=import
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- source: rpkgs
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pkgname: import
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repo: cran
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md5: true
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- alias: r
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|
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@ -3,28 +3,30 @@
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# Contributor: Ward Segers <w@rdsegers.be>
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# Contributor: Alex Branham <branham@utexas.edu>
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_pkgname=irlba
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_pkgver=2.3.5.1
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pkgname=r-${_pkgname,,}
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pkgver=2.3.5.1
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pkgver=${_pkgver//-/.}
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pkgrel=4
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pkgdesc='Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices'
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arch=('x86_64')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices"
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arch=(x86_64)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL3)
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depends=(
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blas
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lapack
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r
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('2cfe6384fef91c223a9920895ce89496f990d1450d731e44309fdbec2bb5c5cf')
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md5sums=('f738200d5272c7258ee59f7074dd4a6a')
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b2sums=('5255a275a2aceec0cb931529eaf67d30ee5058cee5a4c09977f56c9f142d2f3d545b86f4fa220cac5b4b69b93de9efac7b2bd9f6330363f716139be5607e46fd')
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
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mkdir build
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R CMD INSTALL -l build "$_pkgname"
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}
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package() {
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install -dm0755 "${pkgdir}/usr/lib/R/library"
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
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install -d "$pkgdir/usr/lib/R/library"
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
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}
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# vim:set ts=2 sw=2 et:
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
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import os
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import sys
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
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from lilac_r_utils import r_pre_build
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def pre_build():
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for line in edit_file('PKGBUILD'):
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if line.startswith('_pkgver='):
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line = f'_pkgver={_G.newver}'
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
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r_pre_build(_G)
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def post_build():
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git_pkgbuild_commit()
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@ -3,7 +3,16 @@ maintainers:
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- github: starsareintherose
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email: kuoi@bioarchlinux.org
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update_on:
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- regex: irlba_([\d._-]+).tar.gz
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source: regex
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url: https://cran.r-project.org/package=irlba
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- source: rpkgs
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pkgname: irlba
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repo: cran
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md5: true
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- alias: r
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- source: alpmfiles
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pkgname: blas
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filename: usr/lib/libblas\.so\.([^.]+)
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repo: extra
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- source: alpmfiles
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pkgname: lapack
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filename: usr/lib/liblapack\.so\.([^.]+)
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repo: extra
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@ -3,12 +3,12 @@
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_pkgname=ontologyIndex
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_pkgver=2.11
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pkgname=r-${_pkgname,,}
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pkgver=2.11
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Functions for Reading Ontologies into R'
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arch=('any')
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url="https://cran.r-project.org/package=${_pkgname}"
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license=('GPL')
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pkgdesc="Reading Ontologies into R"
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arch=(any)
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url="https://cran.r-project.org/package=$_pkgname"
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license=(GPL)
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depends=(
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r
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)
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@ -17,14 +17,15 @@ optdepends=(
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r-rmarkdown
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)
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source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
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sha256sums=('27f12d5b6e2cb9d0a68841a7298a2b6b21d3567a178e751f406991b336decd9e')
|
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md5sums=('c252ea80927b096d3a0b8be63263aa11')
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b2sums=('ddd7a2b51b0ab2ea66afe7b7db14a3d7b0270f19202848ff2c7b58965840455663520d7959da3fc2ebb99bea2ad2892d30a648fed89c4453a712895a1b62721e')
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|
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build() {
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R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
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mkdir build
|
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R CMD INSTALL -l build "$_pkgname"
|
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}
|
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|
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package() {
|
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install -dm0755 "${pkgdir}/usr/lib/R/library"
|
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cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
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install -d "$pkgdir/usr/lib/R/library"
|
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cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
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}
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# vim:set ts=2 sw=2 et:
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|
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|
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@ -1,12 +1,13 @@
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#!/usr/bin/env python3
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from lilaclib import *
|
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|
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import os
|
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import sys
|
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sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
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from lilac_r_utils import r_pre_build
|
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|
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def pre_build():
|
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for line in edit_file('PKGBUILD'):
|
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if line.startswith('_pkgver='):
|
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line = f'_pkgver={_G.newver}'
|
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print(line)
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update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
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r_pre_build(_G)
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|
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def post_build():
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git_pkgbuild_commit()
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|
|
|
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|
|
@ -3,7 +3,8 @@ maintainers:
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- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
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update_on:
|
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- regex: ontologyIndex_([\d._-]+).tar.gz
|
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source: regex
|
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url: https://cran.r-project.org/package=ontologyIndex
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- source: rpkgs
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pkgname: ontologyIndex
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repo: cran
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md5: true
|
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- alias: r
|
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|
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|
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|
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@ -4,30 +4,32 @@
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_pkgname=prettyunits
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_pkgver=1.2.0
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pkgname=r-${_pkgname,,}
|
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pkgver=1.2.0
|
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pkgver=${_pkgver//-/.}
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pkgrel=1
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pkgdesc='Pretty, Human Readable Formatting of Quantities'
|
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arch=('any')
|
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url="https://cran.r-project.org/package=${_pkgname}"
|
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license=('MIT')
|
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pkgdesc="Pretty, Human Readable Formatting of Quantities"
|
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arch=(any)
|
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url="https://cran.r-project.org/package=$_pkgname"
|
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license=(MIT)
|
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depends=(
|
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r
|
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)
|
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optdepends=(
|
||||
r-codetools
|
||||
r-covr
|
||||
r-testthat
|
||||
)
|
||||
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('f059f27e2a5c82e351fe05b87ad712f7afc273c651450453f59d99af5deeacea')
|
||||
md5sums=('2e2db8105f214b80d3d4254b8aabb255')
|
||||
b2sums=('1ab33348ad19218962ec8de12ad7e86a570c0567a2a77daa5f4d9a99c7b03ae987e0ec54db598526b0c8775099ce3f9aed273b9a4e2a081dce1cb52f86e5a958')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
|
||||
install -d "$pkgdir/usr/share/licenses/$pkgname"
|
||||
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: prettyunits_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=prettyunits
|
||||
- source: rpkgs
|
||||
pkgname: prettyunits
|
||||
repo: cran
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
|
|
@ -3,12 +3,12 @@
|
|||
_pkgname=rstudioapi
|
||||
_pkgver=0.15.0
|
||||
pkgname=r-${_pkgname,,}
|
||||
pkgver=0.15.0
|
||||
pkgver=${_pkgver//-/.}
|
||||
pkgrel=1
|
||||
pkgdesc='Safely Access the RStudio API'
|
||||
arch=('any')
|
||||
url="https://cran.r-project.org/package=${_pkgname}"
|
||||
license=('MIT')
|
||||
pkgdesc="Safely Access the RStudio API"
|
||||
arch=(any)
|
||||
url="https://cran.r-project.org/package=$_pkgname"
|
||||
license=(MIT)
|
||||
depends=(
|
||||
r
|
||||
)
|
||||
|
|
@ -20,15 +20,18 @@ optdepends=(
|
|||
r-testthat
|
||||
)
|
||||
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
|
||||
sha256sums=('935bc81dca37d3d6e77982bfe6e7fbd779e8606e5b7e00d0ba4c80fec0416ccf')
|
||||
md5sums=('25e0dafe967089165efab98158a0d6da')
|
||||
b2sums=('06f27d5fe31d24f964a61dc663805274f9d99be4d38c8265d66d3b9ea7e3be88cfe00ca1d478fb35b8bd118522364a075120897dbe7539f61c17ad328bc7b90e')
|
||||
|
||||
build() {
|
||||
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
|
||||
mkdir build
|
||||
R CMD INSTALL -l build "$_pkgname"
|
||||
}
|
||||
|
||||
package() {
|
||||
install -dm0755 "${pkgdir}/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
|
||||
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
|
||||
install -d "$pkgdir/usr/lib/R/library"
|
||||
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
|
||||
|
||||
install -d "$pkgdir/usr/share/licenses/$pkgname"
|
||||
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
|
||||
}
|
||||
# vim:set ts=2 sw=2 et:
|
||||
|
|
|
|||
|
|
@ -1,12 +1,13 @@
|
|||
#!/usr/bin/env python3
|
||||
from lilaclib import *
|
||||
|
||||
import os
|
||||
import sys
|
||||
sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
|
||||
from lilac_r_utils import r_pre_build
|
||||
|
||||
def pre_build():
|
||||
for line in edit_file('PKGBUILD'):
|
||||
if line.startswith('_pkgver='):
|
||||
line = f'_pkgver={_G.newver}'
|
||||
print(line)
|
||||
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
|
||||
r_pre_build(_G)
|
||||
|
||||
def post_build():
|
||||
git_pkgbuild_commit()
|
||||
|
|
|
|||
|
|
@ -3,7 +3,8 @@ maintainers:
|
|||
- github: starsareintherose
|
||||
email: kuoi@bioarchlinux.org
|
||||
update_on:
|
||||
- regex: rstudioapi_([\d._-]+).tar.gz
|
||||
source: regex
|
||||
url: https://cran.r-project.org/package=rstudioapi
|
||||
- source: rpkgs
|
||||
pkgname: rstudioapi
|
||||
repo: cran
|
||||
md5: true
|
||||
- alias: r
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue