fermi-lite: use lh3 and apply patch

BioArchLinux/fermi-lite/PKGBUILD

@@ -1,16 +1,19 @@
 # Maintainer: PumpkinCheshire <sollyonzou at gmail dot com>
 
 pkgname=fermi-lite
-pkgver=0.1.r15.g5bc90f8
+pkgver=0.1.r13.g85f159e
 pkgrel=1
 pkgdesc="Standalone C library for assembling Illumina short reads in small regions"
 arch=('x86_64')
-url="https://github.com/walaj/fermi-lite"
+url="https://github.com/lh3/fermi-lite"
 license=('MIT')
 depends=('zlib')
-makedepends=('git' 'make')
-source=("git+${url}.git")
-sha256sums=('SKIP')
+makedepends=('git' 'make' 'patch')
+source=("git+${url}.git"
+"001-bwa.patch::${url}/compare/master...walaj:fermi-lite:master.diff"
+)
+sha256sums=('SKIP'
+            '9f77d739ad2b276344d4ee3301c41247550242c7ad26dd47088934c1341e3bda')
 
 pkgver() {
     git -C ${pkgname} describe --long --tags | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g'
@@ -20,6 +23,7 @@ prepare(){
     cd ${pkgname}
     sed -i "s|CFLAGS=|CFLAGS=-fPIC |" Makefile
     sed -i "s|^const|extern const|" rle.h
+    patch --strip=1 --fuzz=3 < ../001-bwa.patch
 }
 build() {
     cd "$srcdir/${pkgname}"

BioArchLinux/fermi-lite/lilac.yaml

@@ -5,4 +5,4 @@ post_build_script: |
   git_pkgbuild_commit()
 update_on:
   - source: github
-    github: walaj/fermi-lite
+    github: lh3/fermi-lite