From 9e5af0c3944bb82e6d943cbf79ba99b71776a189 Mon Sep 17 00:00:00 2001 From: sukanka Date: Mon, 8 May 2023 19:54:26 +0800 Subject: [PATCH] r-*: fresh depends --- BioArchLinux/r-amplican/PKGBUILD | 3 +- BioArchLinux/r-amplican/lilac.yaml | 1 - BioArchLinux/r-annotationdbi/PKGBUILD | 3 +- BioArchLinux/r-bench/PKGBUILD | 4 +- BioArchLinux/r-delayedarray/PKGBUILD | 3 +- BioArchLinux/r-delayedarray/lilac.yaml | 1 + BioArchLinux/r-distr/PKGBUILD | 3 +- BioArchLinux/r-evaluate/PKGBUILD | 4 +- BioArchLinux/r-ggbeeswarm/PKGBUILD | 3 +- BioArchLinux/r-ggbeeswarm/lilac.yaml | 1 + BioArchLinux/r-hdf5array/PKGBUILD | 5 ++- BioArchLinux/r-hdf5array/lilac.yaml | 1 + BioArchLinux/r-hmisc/PKGBUILD | 6 ++- BioArchLinux/r-logistf/PKGBUILD | 6 ++- BioArchLinux/r-primme/PKGBUILD | 4 +- BioArchLinux/r-primme/lilac.yaml | 2 +- BioArchLinux/r-profvis/PKGBUILD | 5 ++- BioArchLinux/r-profvis/lilac.yaml | 3 ++ BioArchLinux/r-qdaptools/PKGBUILD | 4 +- BioArchLinux/r-qdaptools/lilac.yaml | 2 +- BioArchLinux/r-s4arrays/PKGBUILD | 39 +++++++++++++++++++ BioArchLinux/r-s4arrays/lilac.yaml | 22 +++++++++++ BioArchLinux/r-scattermore/PKGBUILD | 8 +++- BioArchLinux/r-speedglm/PKGBUILD | 3 +- BioArchLinux/r-speedglm/lilac.yaml | 6 ++- BioArchLinux/r-summarizedexperiment/PKGBUILD | 3 +- .../r-summarizedexperiment/lilac.yaml | 1 + BioArchLinux/r-testthat/PKGBUILD | 3 +- BioArchLinux/r-tseries/PKGBUILD | 3 +- BioArchLinux/r-tseries/lilac.yaml | 1 + BioArchLinux/r-viridis/PKGBUILD | 6 +-- 31 files changed, 125 insertions(+), 34 deletions(-) create mode 100644 BioArchLinux/r-s4arrays/PKGBUILD create mode 100644 BioArchLinux/r-s4arrays/lilac.yaml diff --git a/BioArchLinux/r-amplican/PKGBUILD b/BioArchLinux/r-amplican/PKGBUILD index 901bfaf1ea..2d1916e6dd 100644 --- a/BioArchLinux/r-amplican/PKGBUILD +++ b/BioArchLinux/r-amplican/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=amplican _pkgver=1.21.0 pkgname=r-${_pkgname,,} pkgver=1.21.0 -pkgrel=1 +pkgrel=2 pkgdesc='Automated analysis of CRISPR experiments' arch=('x86_64') url="https://bioconductor.org/packages/${_pkgname}" @@ -14,7 +14,6 @@ depends=( r-biocgenerics r-biocparallel r-biostrings - r-clustercrit r-data.table r-dplyr r-genomeinfodb diff --git a/BioArchLinux/r-amplican/lilac.yaml b/BioArchLinux/r-amplican/lilac.yaml index d1b23ebbd0..ae09901234 100644 --- a/BioArchLinux/r-amplican/lilac.yaml +++ b/BioArchLinux/r-amplican/lilac.yaml @@ -6,7 +6,6 @@ repo_depends: - r-biocgenerics - r-biocparallel - r-biostrings -- r-clustercrit - r-data.table - r-dplyr - r-genomeinfodb diff --git a/BioArchLinux/r-annotationdbi/PKGBUILD b/BioArchLinux/r-annotationdbi/PKGBUILD index 9b01c467d5..6d7fcc94cb 100644 --- a/BioArchLinux/r-annotationdbi/PKGBUILD +++ b/BioArchLinux/r-annotationdbi/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=AnnotationDbi _pkgver=1.62.1 pkgname=r-${_pkgname,,} pkgver=1.62.1 -pkgrel=1 +pkgrel=2 pkgdesc='Manipulation of SQLite-based annotations in Bioconductor' arch=('any') url="https://bioconductor.org/packages/${_pkgname}" @@ -33,6 +33,7 @@ optdepends=( r-reactome.db r-runit r-txdb.hsapiens.ucsc.hg19.knowngene + r-utils ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('6187e6b4b26b92ef79d91cef94c9b963ff9aa3f579cfb3909ee082009acbab28') diff --git a/BioArchLinux/r-bench/PKGBUILD b/BioArchLinux/r-bench/PKGBUILD index 454b625472..5a5a445686 100644 --- a/BioArchLinux/r-bench/PKGBUILD +++ b/BioArchLinux/r-bench/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=bench _pkgver=1.1.3 pkgname=r-${_pkgname,,} pkgver=1.1.3 -pkgrel=1 +pkgrel=2 pkgdesc='High Precision Timing of R Expressions' arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" @@ -24,8 +24,6 @@ optdepends=( r-ggbeeswarm r-ggplot2 r-ggridges - r-jsonlite - r-mockery r-parallel r-scales r-testthat diff --git a/BioArchLinux/r-delayedarray/PKGBUILD b/BioArchLinux/r-delayedarray/PKGBUILD index 9b434944d1..511fd45a97 100644 --- a/BioArchLinux/r-delayedarray/PKGBUILD +++ b/BioArchLinux/r-delayedarray/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=DelayedArray _pkgver=0.25.0 pkgname=r-${_pkgname,,} pkgver=0.25.0 -pkgrel=1 +pkgrel=2 pkgdesc='A unified framework for working transparently with on-disk and in-memory array-like datasets' arch=('x86_64') url="https://bioconductor.org/packages/${_pkgname}" @@ -14,6 +14,7 @@ depends=( r-biocgenerics r-iranges r-matrixgenerics + r-s4arrays r-s4vectors ) optdepends=( diff --git a/BioArchLinux/r-delayedarray/lilac.yaml b/BioArchLinux/r-delayedarray/lilac.yaml index 6d8de665cc..1b8ee9f792 100644 --- a/BioArchLinux/r-delayedarray/lilac.yaml +++ b/BioArchLinux/r-delayedarray/lilac.yaml @@ -6,6 +6,7 @@ repo_depends: - r-biocgenerics - r-iranges - r-matrixgenerics +- r-s4arrays - r-s4vectors update_on: - regex: DelayedArray_([\d._-]+).tar.gz diff --git a/BioArchLinux/r-distr/PKGBUILD b/BioArchLinux/r-distr/PKGBUILD index 0222134330..75841fa4ba 100644 --- a/BioArchLinux/r-distr/PKGBUILD +++ b/BioArchLinux/r-distr/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=distr _pkgver=2.9.1 pkgname=r-${_pkgname,,} pkgver=2.9.1 -pkgrel=4 +pkgrel=5 pkgdesc='Object Oriented Implementation of Distributions' arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" @@ -18,6 +18,7 @@ optdepends=( r-distrex r-distrmod r-knitr + r-robastbase r-roptest r-svunit ) diff --git a/BioArchLinux/r-evaluate/PKGBUILD b/BioArchLinux/r-evaluate/PKGBUILD index 6971c2f584..4d567e934e 100644 --- a/BioArchLinux/r-evaluate/PKGBUILD +++ b/BioArchLinux/r-evaluate/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=evaluate _pkgver=0.21 pkgname=r-${_pkgname,,} pkgver=0.21 -pkgrel=1 +pkgrel=2 pkgdesc='Parsing and Evaluation Tools that Provide More Details than the Default' arch=('any') url="https://cran.r-project.org/package=${_pkgname}" @@ -16,7 +16,9 @@ optdepends=( r-covr r-ggplot2 r-lattice + r-rlang r-testthat + r-withr ) source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('3178c99cee8917d7d128806d064d4fecce7845ed07f42e759dcc0adda89c22b9') diff --git a/BioArchLinux/r-ggbeeswarm/PKGBUILD b/BioArchLinux/r-ggbeeswarm/PKGBUILD index 9e3c0dce95..8a6172e754 100644 --- a/BioArchLinux/r-ggbeeswarm/PKGBUILD +++ b/BioArchLinux/r-ggbeeswarm/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=ggbeeswarm _pkgver=0.7.2 pkgname=r-${_pkgname,,} pkgver=0.7.2 -pkgrel=1 +pkgrel=2 pkgdesc='Categorical Scatter (Violin Point) Plots' arch=('any') url="https://cran.r-project.org/package=${_pkgname}" @@ -12,6 +12,7 @@ license=('GPL') depends=( r r-beeswarm + r-cli r-ggplot2 r-lifecycle r-vipor diff --git a/BioArchLinux/r-ggbeeswarm/lilac.yaml b/BioArchLinux/r-ggbeeswarm/lilac.yaml index 4e6762c9b0..62650ef160 100644 --- a/BioArchLinux/r-ggbeeswarm/lilac.yaml +++ b/BioArchLinux/r-ggbeeswarm/lilac.yaml @@ -4,6 +4,7 @@ maintainers: email: kuoi@bioarchlinux.org repo_depends: - r-beeswarm +- r-cli - r-ggplot2 - r-lifecycle - r-vipor diff --git a/BioArchLinux/r-hdf5array/PKGBUILD b/BioArchLinux/r-hdf5array/PKGBUILD index 481fd4619c..559934fc7a 100644 --- a/BioArchLinux/r-hdf5array/PKGBUILD +++ b/BioArchLinux/r-hdf5array/PKGBUILD @@ -5,12 +5,13 @@ _pkgname=HDF5Array _pkgver=1.28.0 pkgname=r-${_pkgname,,} pkgver=1.28.0 -pkgrel=1 +pkgrel=2 pkgdesc='HDF5 backend for DelayedArray objects' arch=('x86_64') url="https://bioconductor.org/packages/${_pkgname}" license=('Artistic2.0') depends=( + make r r-biocgenerics r-delayedarray @@ -18,8 +19,8 @@ depends=( r-rhdf5 r-rhdf5filters r-rhdf5lib + r-s4arrays r-s4vectors - make ) optdepends=( r-biocparallel diff --git a/BioArchLinux/r-hdf5array/lilac.yaml b/BioArchLinux/r-hdf5array/lilac.yaml index 25e64e9fd6..9f15b04744 100644 --- a/BioArchLinux/r-hdf5array/lilac.yaml +++ b/BioArchLinux/r-hdf5array/lilac.yaml @@ -9,6 +9,7 @@ repo_depends: - r-rhdf5 - r-rhdf5filters - r-rhdf5lib +- r-s4arrays - r-s4vectors update_on: - regex: HDF5Array_([\d._-]+).tar.gz diff --git a/BioArchLinux/r-hmisc/PKGBUILD b/BioArchLinux/r-hmisc/PKGBUILD index 14eaf2f1a5..f3d30236d4 100644 --- a/BioArchLinux/r-hmisc/PKGBUILD +++ b/BioArchLinux/r-hmisc/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=Hmisc _pkgver=5.0-1 pkgname=r-${_pkgname,,} pkgver=5.0.1 -pkgrel=4 +pkgrel=5 pkgdesc='Harrell Miscellaneous' arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" @@ -29,6 +29,9 @@ optdepends=( r-acepack r-chron r-digest + r-gt + r-htmlwidgets + r-jsonlite r-kableextra r-lattice r-latticeextra @@ -44,6 +47,7 @@ optdepends=( r-rlang r-rms r-rstudioapi + r-sparkline r-survival r-tables r-vgam diff --git a/BioArchLinux/r-logistf/PKGBUILD b/BioArchLinux/r-logistf/PKGBUILD index 69bebe2279..df481ff741 100644 --- a/BioArchLinux/r-logistf/PKGBUILD +++ b/BioArchLinux/r-logistf/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=logistf _pkgver=1.25.0 pkgname=r-${_pkgname,,} pkgver=1.25.0 -pkgrel=1 +pkgrel=2 pkgdesc="Firth's Bias-Reduced Logistic Regression" arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" @@ -14,6 +14,10 @@ depends=( r-formula.tools r-mice ) +optdepends=( + r-emmeans + r-estimability +) source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('3d3ed3ce30a8b2afb82ccbf2dff3dbf119f533d252eb91131d50166ebd96e870') diff --git a/BioArchLinux/r-primme/PKGBUILD b/BioArchLinux/r-primme/PKGBUILD index 922562f15f..dcf4008a38 100644 --- a/BioArchLinux/r-primme/PKGBUILD +++ b/BioArchLinux/r-primme/PKGBUILD @@ -5,7 +5,7 @@ _pkgname=PRIMME _pkgver=3.2-3 pkgname=r-${_pkgname,,} pkgver=3.2.3 -pkgrel=2 +pkgrel=3 pkgdesc='Eigenvalues and Singular Values and Vectors from Large Matrices' arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" @@ -18,7 +18,7 @@ depends=( optdepends=( r-matrix ) -source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +source=("https://cran.r-project.org/src/contrib/Archive/${_pkgname}/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('052c606d7648a4de5b94836e2c410a52cd1562f5cf660cb9351bd9e7b1643705') build() { diff --git a/BioArchLinux/r-primme/lilac.yaml b/BioArchLinux/r-primme/lilac.yaml index ffe5f6be65..2c856dc7a6 100644 --- a/BioArchLinux/r-primme/lilac.yaml +++ b/BioArchLinux/r-primme/lilac.yaml @@ -7,5 +7,5 @@ repo_depends: update_on: - regex: PRIMME_([\d._-]+).tar.gz source: regex - url: https://cran.r-project.org/package=PRIMME + url: https://cran.r-project.org/src/contrib/Archive/PRIMME - alias: r diff --git a/BioArchLinux/r-profvis/PKGBUILD b/BioArchLinux/r-profvis/PKGBUILD index 21319d61bb..01caff6647 100644 --- a/BioArchLinux/r-profvis/PKGBUILD +++ b/BioArchLinux/r-profvis/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=profvis _pkgver=0.3.7 pkgname=r-${_pkgname,,} pkgver=0.3.7 -pkgrel=3 +pkgrel=4 pkgdesc='Interactive Visualizations for Profiling R Code' arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" @@ -12,7 +12,10 @@ license=('GPL') depends=( r r-htmlwidgets + r-purrr + r-rlang r-stringr + r-vctrs ) optdepends=( r-devtools diff --git a/BioArchLinux/r-profvis/lilac.yaml b/BioArchLinux/r-profvis/lilac.yaml index 08ceaafd87..bfec3cf12f 100644 --- a/BioArchLinux/r-profvis/lilac.yaml +++ b/BioArchLinux/r-profvis/lilac.yaml @@ -3,7 +3,10 @@ maintainers: - github: sukanka repo_depends: - r-htmlwidgets + - r-purrr + - r-rlang - r-stringr + - r-vctrs update_on: - regex: profvis_([\d._-]+).tar.gz source: regex diff --git a/BioArchLinux/r-qdaptools/PKGBUILD b/BioArchLinux/r-qdaptools/PKGBUILD index 5e93d4e508..da9e817504 100644 --- a/BioArchLinux/r-qdaptools/PKGBUILD +++ b/BioArchLinux/r-qdaptools/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=qdapTools _pkgver=1.3.5 pkgname=r-${_pkgname,,} pkgver=1.3.5 -pkgrel=6 +pkgrel=7 pkgdesc="Tools for the 'qdap' Package" arch=('any') url="https://cran.r-project.org/package=${_pkgname}" @@ -19,7 +19,7 @@ depends=( optdepends=( r-testthat ) -source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +source=("https://cran.r-project.org/src/contrib/Archive/${_pkgname}/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('8c8828877ab63ad705b69e187c01d7c7098a88989bdde9e956ac559cc6de7e25') build() { diff --git a/BioArchLinux/r-qdaptools/lilac.yaml b/BioArchLinux/r-qdaptools/lilac.yaml index 67294152c8..01434114d2 100644 --- a/BioArchLinux/r-qdaptools/lilac.yaml +++ b/BioArchLinux/r-qdaptools/lilac.yaml @@ -10,5 +10,5 @@ repo_depends: update_on: - regex: qdapTools_([\d._-]+).tar.gz source: regex - url: https://cran.r-project.org/package=qdapTools + url: https://cran.r-project.org/src/contrib/Archive/qdapTools - alias: r diff --git a/BioArchLinux/r-s4arrays/PKGBUILD b/BioArchLinux/r-s4arrays/PKGBUILD new file mode 100644 index 0000000000..66544b8599 --- /dev/null +++ b/BioArchLinux/r-s4arrays/PKGBUILD @@ -0,0 +1,39 @@ +# Maintainer: sukanka + +_pkgname=S4Arrays +_pkgver=1.0.1 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//[:-]/.} +pkgrel=1 +pkgdesc='Foundation of array-like containers in Bioconductor' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Artistic2.0') +depends=( + r + r-biocgenerics + r-crayon + r-iranges + r-s4vectors +) +optdepends=( + r-biocparallel + r-biocstyle + r-delayedarray + r-knitr + r-rmarkdown + r-sparsearray + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('5a0e9d7bdf9fecc2408c8a2c3b90cc40acb617714c15bba85bd361c1d06fcb16') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: diff --git a/BioArchLinux/r-s4arrays/lilac.yaml b/BioArchLinux/r-s4arrays/lilac.yaml new file mode 100644 index 0000000000..63cc76b645 --- /dev/null +++ b/BioArchLinux/r-s4arrays/lilac.yaml @@ -0,0 +1,22 @@ +build_prefix: extra-x86_64 +maintainers: + - github: sukanka +post_build_script: | + git_pkgbuild_commit() + update_aur_repo() +pre_build_script: | + for line in edit_file('PKGBUILD'): + if line.startswith('_pkgver='): + line = f'_pkgver={_G.newver}' + print(line) + update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.')) +repo_depends: + - r-biocgenerics + - r-crayon + - r-iranges + - r-s4vectors +update_on: + - regex: S4Arrays_([\d._-]+).tar.gz + source: regex + url: https://bioconductor.org/packages/S4Arrays + - alias: r diff --git a/BioArchLinux/r-scattermore/PKGBUILD b/BioArchLinux/r-scattermore/PKGBUILD index 76a43993fe..efbae2b448 100644 --- a/BioArchLinux/r-scattermore/PKGBUILD +++ b/BioArchLinux/r-scattermore/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=scattermore _pkgver=1.0 pkgname=r-${_pkgname,,} pkgver=1.0 -pkgrel=1 +pkgrel=2 pkgdesc='Scatterplots with More Points' arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" @@ -14,6 +14,12 @@ depends=( r-ggplot2 r-scales ) +optdepends=( + r-covr + r-knitr + r-rmarkdown + r-testthat +) source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('a71d5d1ae06bc6b7d9a446293e3c12a5ce970754c24a0cc6f31ad0ea52cbaf91') diff --git a/BioArchLinux/r-speedglm/PKGBUILD b/BioArchLinux/r-speedglm/PKGBUILD index 1553fb1245..107edc32e2 100644 --- a/BioArchLinux/r-speedglm/PKGBUILD +++ b/BioArchLinux/r-speedglm/PKGBUILD @@ -3,13 +3,14 @@ _pkgname=speedglm pkgname=r-${_pkgname,,} pkgver=0.3_4 -pkgrel=10 +pkgrel=11 pkgdesc='Fitting Linear and Generalized Linear Models to Large Data Sets' arch=('any') url="https://cran.r-project.org/package=${_pkgname}" license=('GPL') depends=( r + r-biglm ) source=("${_pkgname}-${pkgver}.tar.gz::https://github.com/cran/${_pkgname}/archive/refs/tags/${pkgver//_/-}.tar.gz") sha256sums=('f1f38689d562babbd9d701631608509476c0ff2a34384478c6512b29f00fa767') diff --git a/BioArchLinux/r-speedglm/lilac.yaml b/BioArchLinux/r-speedglm/lilac.yaml index fd6e288506..76bce0e8d4 100644 --- a/BioArchLinux/r-speedglm/lilac.yaml +++ b/BioArchLinux/r-speedglm/lilac.yaml @@ -12,6 +12,8 @@ update_on: - source: github github: cran/speedglm use_max_tag: true - from_pattern: '([\d.]+)-(\d+)' - to_pattern: '\1_\2' + from_pattern: ([\d.]+)-(\d+) + to_pattern: \1_\2 - alias: r +repo_depends: + - r-biglm diff --git a/BioArchLinux/r-summarizedexperiment/PKGBUILD b/BioArchLinux/r-summarizedexperiment/PKGBUILD index 54892576a5..e6f5d5f2eb 100644 --- a/BioArchLinux/r-summarizedexperiment/PKGBUILD +++ b/BioArchLinux/r-summarizedexperiment/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=SummarizedExperiment _pkgver=1.30.0 pkgname=r-${_pkgname,,} pkgver=1.30.0 -pkgrel=1 +pkgrel=2 pkgdesc='SummarizedExperiment container' arch=('any') url="https://bioconductor.org/packages/${_pkgname}" @@ -18,6 +18,7 @@ depends=( r-genomicranges r-iranges r-matrixgenerics + r-s4arrays r-s4vectors ) optdepends=( diff --git a/BioArchLinux/r-summarizedexperiment/lilac.yaml b/BioArchLinux/r-summarizedexperiment/lilac.yaml index 9f0e079fd7..cf6b046275 100644 --- a/BioArchLinux/r-summarizedexperiment/lilac.yaml +++ b/BioArchLinux/r-summarizedexperiment/lilac.yaml @@ -10,6 +10,7 @@ repo_depends: - r-genomicranges - r-iranges - r-matrixgenerics +- r-s4arrays - r-s4vectors update_on: - regex: SummarizedExperiment_([\d._-]+).tar.gz diff --git a/BioArchLinux/r-testthat/PKGBUILD b/BioArchLinux/r-testthat/PKGBUILD index ad26727438..634a4c0f31 100644 --- a/BioArchLinux/r-testthat/PKGBUILD +++ b/BioArchLinux/r-testthat/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=testthat _pkgver=3.1.8 pkgname=r-${_pkgname,,} pkgver=3.1.8 -pkgrel=1 +pkgrel=2 pkgdesc='Unit Testing for R' arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" @@ -35,7 +35,6 @@ optdepends=( r-curl r-diffviewer r-knitr - r-mockery r-rmarkdown r-rstudioapi r-shiny diff --git a/BioArchLinux/r-tseries/PKGBUILD b/BioArchLinux/r-tseries/PKGBUILD index c40a2d1742..b16f4689fe 100644 --- a/BioArchLinux/r-tseries/PKGBUILD +++ b/BioArchLinux/r-tseries/PKGBUILD @@ -4,13 +4,14 @@ _pkgname=tseries _pkgver=0.10-54 pkgname=r-${_pkgname,,} pkgver=0.10.54 -pkgrel=1 +pkgrel=2 pkgdesc='Time Series Analysis and Computational Finance' arch=('x86_64') url="https://cran.r-project.org/package=${_pkgname}" license=('GPL') depends=( r + r-jsonlite r-quadprog r-quantmod r-zoo diff --git a/BioArchLinux/r-tseries/lilac.yaml b/BioArchLinux/r-tseries/lilac.yaml index 0854869c62..e40fc5f268 100644 --- a/BioArchLinux/r-tseries/lilac.yaml +++ b/BioArchLinux/r-tseries/lilac.yaml @@ -3,6 +3,7 @@ maintainers: - github: starsareintherose email: kuoi@bioarchlinux.org repo_depends: +- r-jsonlite - r-quadprog - r-quantmod - r-zoo diff --git a/BioArchLinux/r-viridis/PKGBUILD b/BioArchLinux/r-viridis/PKGBUILD index 95763731d7..54968bf9bf 100644 --- a/BioArchLinux/r-viridis/PKGBUILD +++ b/BioArchLinux/r-viridis/PKGBUILD @@ -4,7 +4,7 @@ _pkgname=viridis _pkgver=0.6.3 pkgname=r-${_pkgname,,} pkgver=0.6.3 -pkgrel=1 +pkgrel=2 pkgdesc='Colorblind-Friendly Color Maps for R' arch=('any') url="https://cran.r-project.org/package=${_pkgname}" @@ -25,12 +25,10 @@ optdepends=( r-mapproj r-maps r-mass - r-raster - r-rastervis - r-rgdal r-rmarkdown r-scales r-svglite + r-terra r-testthat r-vdiffr )