add hisat2

BioArchLinux/hisat2/PKGBUILD

@@ -0,0 +1,22 @@
+pkgname=hisat2
+pkgver=2.2.1
+pkgrel=1
+pkgdesc='A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes'
+url="https://ccb.jhu.edu/software/$pkgname"
+license=(GPL3)
+arch=(x86_64)
+depends=('python' 'perl')
+source=("$pkgname-$pkgver.tar.gz::https://github.com/DaehwanKimLab/hisat2/archive/refs/tags/v2.2.1.tar.gz")
+sha256sums=('f3f4f867d0a6b1f880d64efc19deaa5788c62050e0a4d614ce98b3492f702599')
+
+build() {
+	cd "$srcdir/$pkgname-$pkgver"
+	make
+}
+
+package() {
+	cd "$srcdir/$pkgname-$pkgver"
+	for bin in hisat2 hisat2-*; do
+		install -Dm755 $bin "$pkgdir/usr/bin/$bin"
+	done
+}

BioArchLinux/hisat2/lilac.py

@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+
+def pre_build():
+    update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+    run_cmd(['updpkgsums'])
+
+
+def post_build():
+    git_add_files('PKGBUILD')
+    git_commit()

BioArchLinux/hisat2/lilac.yaml

@@ -0,0 +1,9 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: sukanka
+  email: su975853527@gmail.com
+update_on:
+- source: github
+  github: DaehwanKimLab/hisat2
+  use_latest_release: true
+  prefix: 'v'