From a7032062177e43d900e79c957652f6f2561a1689 Mon Sep 17 00:00:00 2001
From: Kuoi <starsareintherose@outlook.com>
Date: Sun, 10 Jul 2022 21:48:09 +0100
Subject: [PATCH] try to add freebayes

---
 prepare/freebayes/PKGBUILD | 33 +++++++++++++++++++++++++++++++++
 1 file changed, 33 insertions(+)
 create mode 100644 prepare/freebayes/PKGBUILD

diff --git a/prepare/freebayes/PKGBUILD b/prepare/freebayes/PKGBUILD
new file mode 100644
index 0000000000..27476f86ca
--- /dev/null
+++ b/prepare/freebayes/PKGBUILD
@@ -0,0 +1,33 @@
+# maintainer: Guoyi
+pkgname=freebayes
+pkgver=1.3.6
+pkgrel=1
+pkgdesc="About Bayesian haplotype-based genetic polymorphism discovery and genotyping"
+arch=('x86_64')
+url="https://github.com/freebayes/freebayes"
+license=('MIT')
+
+depends=('tabixpp' 'vcflib' 'vcftools' 'samtools' 'parallel' 'bc')
+makedepends=('ninja' 'meson' 'git' 'cmake' 'make')
+optdepends=()
+
+source=(git+https://github.com/freebayes/freebayes.git#tag=v${pkgver})
+noextract=()
+sha256sums=('SKIP')
+prepare() {
+  cd "$pkgname"
+  git submodule update --init --recursive
+}
+build() {
+  cd "$pkgname"
+  rm -rf build
+  mkdir build
+  meson --prefix=/usr --buildtype=debug build
+  cd build
+  ninja -v
+}
+
+package() {
+  cd "$pkgname-$pkgver"
+  install -Dm 755 build/freebayes $pkgdir/usr/bin/freebayes
+}