refresh depends, r-rstanarm add limit 10h

2025-03-10 12:02:42 +00:00 · 2023-04-24 09:39:33 +08:00 · 2023-04-24 09:39:33 +08:00 · ab6efde45d
commit ab6efde45d
parent cda8f2b2ea
18 changed files with 27 additions and 23 deletions
--- a/BioArchLinux/r-afex/PKGBUILD
+++ b/BioArchLinux/r-afex/PKGBUILD
@ -4,7 +4,7 @@ _pkgname=afex
 _pkgver=1.3-0
 pkgname=r-${_pkgname,,}
 pkgver=1.3.0
-pkgrel=2
+pkgrel=3
 pkgdesc='Analysis of Factorial Experiments'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -33,6 +33,7 @@ optdepends=(
  r-ggpubr
  r-ggresidpanel
  r-glmmtmb
+  r-grid
  r-jtools
  r-knitr
  r-lattice
@ -56,6 +57,7 @@ optdepends=(
  r-statmod
  r-testthat
  r-tidyr
+  r-vdiffr
  r-xtable
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
--- a/BioArchLinux/r-bigrquery/PKGBUILD
+++ b/BioArchLinux/r-bigrquery/PKGBUILD
@ -4,7 +4,7 @@ _pkgname=bigrquery
 _pkgver=1.4.2
 pkgname=r-${_pkgname,,}
 pkgver=1.4.2
-pkgrel=2
+pkgrel=3
 pkgdesc="An Interface to Google's 'BigQuery' 'API'"
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -14,6 +14,7 @@ depends=(
  r-assertthat
  r-bit64
  r-brio
+  r-cli
  r-curl
  r-dbi
  r-gargle
@ -27,6 +28,7 @@ depends=(
  r-rcpp
  r-rlang
  r-tibble
+  r-withr
 )
 optdepends=(
  r-blob
@ -38,7 +40,6 @@ optdepends=(
  r-readr
  r-sodium
  r-testthat
-  r-withr
  r-wk
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
--- a/BioArchLinux/r-bigrquery/lilac.yaml
+++ b/BioArchLinux/r-bigrquery/lilac.yaml
@ -6,6 +6,7 @@ repo_depends:
 - r-assertthat
 - r-bit64
 - r-brio
+- r-cli
 - r-curl
 - r-dbi
 - r-gargle
@ -19,6 +20,7 @@ repo_depends:
 - r-rcpp
 - r-rlang
 - r-tibble
+- r-withr
 update_on:
 - regex: bigrquery_([\d._-]+).tar.gz
  source: regex
--- a/BioArchLinux/r-gargle/PKGBUILD
+++ b/BioArchLinux/r-gargle/PKGBUILD
@ -4,7 +4,7 @@ _pkgname=gargle
 _pkgver=1.4.0
 pkgname=r-${_pkgname,,}
 pkgver=1.4.0
-pkgrel=2
+pkgrel=3
 pkgdesc='Utilities for Working with Google APIs'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -20,7 +20,6 @@ depends=(
  r-openssl
  r-rappdirs
  r-rlang
-  r-rstudioapi
  r-withr
 )
 optdepends=(
@ -29,7 +28,6 @@ optdepends=(
  r-covr
  r-httpuv
  r-knitr
-  r-mockr
  r-rmarkdown
  r-sodium
  r-spelling
--- a/BioArchLinux/r-gargle/lilac.yaml
+++ b/BioArchLinux/r-gargle/lilac.yaml
@ -12,7 +12,6 @@ repo_depends:
 - r-openssl
 - r-rappdirs
 - r-rlang
- r-rstudioapi
 - r-withr
 update_on:
 - regex: gargle_([\d._-]+).tar.gz
--- a/BioArchLinux/r-gmwt/PKGBUILD
+++ b/BioArchLinux/r-gmwt/PKGBUILD
@ -4,7 +4,7 @@ _pkgname=gMWT
 _pkgver=1.2
 pkgname=r-${_pkgname,,}
 pkgver=1.2
-pkgrel=2
+pkgrel=3
 pkgdesc='Generalized Mann-Whitney Type Tests'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -15,7 +15,7 @@ depends=(
  r-rcpp
  r-rcpparmadillo
 )
-source=("https://cran.r-project.org/src/contrib/Archive/${_pkgname}/${_pkgname}_${_pkgver}.tar.gz")
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
 sha256sums=('6a076da57ebc5854a8331541f1d65ad8003839112bdb5400b5a22da94cadc83f')

 build() {
--- a/BioArchLinux/r-gmwt/lilac.yaml
+++ b/BioArchLinux/r-gmwt/lilac.yaml
@ -9,5 +9,5 @@ repo_depends:
 update_on:
 - regex: gMWT_([\d._-]+).tar.gz
  source: regex
-  url: https://cran.r-project.org/src/contrib/Archive/gMWT/
+  url: https://cran.r-project.org/package=gMWT
 - alias: r
--- a/BioArchLinux/r-parameters/PKGBUILD
+++ b/BioArchLinux/r-parameters/PKGBUILD
@ -4,7 +4,7 @@ _pkgname=parameters
 _pkgver=0.21.0
 pkgname=r-${_pkgname,,}
 pkgver=0.21.0
-pkgrel=2
+pkgrel=3
 pkgdesc='Processing of Model Parameters'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -69,7 +69,6 @@ optdepends=(
  r-ivreg
  r-knitr
  r-lavaan
-  r-lavasearch2
  r-lfe
  r-lm.beta
  r-lme4
--- a/BioArchLinux/r-processx/PKGBUILD
+++ b/BioArchLinux/r-processx/PKGBUILD
@ -4,7 +4,7 @@ _pkgname=processx
 _pkgver=3.8.1
 pkgname=r-${_pkgname,,}
 pkgver=3.8.1
-pkgrel=2
+pkgrel=3
 pkgdesc='Execute and Control System Processes'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -24,6 +24,7 @@ optdepends=(
  r-parallel
  r-rlang
  r-testthat
+  r-webfakes
  r-withr
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
--- a/BioArchLinux/r-ps/PKGBUILD
+++ b/BioArchLinux/r-ps/PKGBUILD
@ -4,7 +4,7 @@ _pkgname=ps
 _pkgver=1.7.5
 pkgname=r-${_pkgname,,}
 pkgver=1.7.5
-pkgrel=3
+pkgrel=4
 pkgdesc='List, Query, Manipulate System Processes'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -22,6 +22,7 @@ optdepends=(
  r-r6
  r-rlang
  r-testthat
+  r-webfakes
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
 sha256sums=('1abc3ae3c55797b994973f7e43bf5c7bbb4da649a0dcfad36675e196dba4cb4e')
--- a/BioArchLinux/r-roi/PKGBUILD
+++ b/BioArchLinux/r-roi/PKGBUILD
@ -4,13 +4,14 @@ _pkgname=ROI
 _pkgver=1.0-0
 pkgname=r-${_pkgname,,}
 pkgver=1.0.0
-pkgrel=5
+pkgrel=6
 pkgdesc='R Optimization Infrastructure'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
 license=('GPL')
 depends=(
  r
+  r-checkmate
  r-registry
  r-slam
 )
--- a/BioArchLinux/r-roi/lilac.yaml
+++ b/BioArchLinux/r-roi/lilac.yaml
@ -3,6 +3,7 @@ maintainers:
 - github: starsareintherose
  email: kuoi@bioarchlinux.org
 repo_depends:
+- r-checkmate
 - r-registry
 - r-slam
 update_on:
--- a/BioArchLinux/r-rstanarm/PKGBUILD
+++ b/BioArchLinux/r-rstanarm/PKGBUILD
@ -5,7 +5,7 @@ _pkgname=rstanarm
 _pkgver=2.21.3
 pkgname=r-${_pkgname,,}
 pkgver=2.21.3
-pkgrel=4
+pkgrel=5
 pkgdesc='Bayesian Applied Regression Modeling via Stan'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
--- a/BioArchLinux/r-rstanarm/lilac.yaml
+++ b/BioArchLinux/r-rstanarm/lilac.yaml
@ -19,3 +19,4 @@ update_on:
    source: regex
    url: https://cran.r-project.org/package=rstanarm
  - alias: r
+time_limit_hours: 10
--- a/BioArchLinux/r-scatterpie/PKGBUILD
+++ b/BioArchLinux/r-scatterpie/PKGBUILD
@ -4,13 +4,14 @@ _pkgname=scatterpie
 _pkgver=0.1.9
 pkgname=r-${_pkgname,,}
 pkgver=0.1.9
-pkgrel=1
+pkgrel=2
 pkgdesc='Scatter Pie Plot'
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
 license=('Artistic2.0')
 depends=(
  r
+  r-dplyr
  r-ggforce
  r-ggfun
  r-ggplot2
--- a/BioArchLinux/r-scatterpie/lilac.yaml
+++ b/BioArchLinux/r-scatterpie/lilac.yaml
@ -3,6 +3,7 @@ maintainers:
 - github: starsareintherose
  email: kuoi@bioarchlinux.org
 repo_depends:
+- r-dplyr
 - r-ggforce
 - r-ggfun
 - r-ggplot2
--- a/BioArchLinux/r-th.data/PKGBUILD
+++ b/BioArchLinux/r-th.data/PKGBUILD
@ -6,7 +6,7 @@ _pkgname=TH.data
 _pkgver=1.1-2
 pkgname=r-${_pkgname,,}
 pkgver=1.1.2
-pkgrel=2
+pkgrel=3
 pkgdesc="TH's Data Archive"
 arch=('any')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -18,13 +18,10 @@ optdepends=(
  r-atr
  r-coin
  r-colorspace
-  r-dplyr
-  r-gdata
  r-gridextra
  r-knitr
  r-lattice
  r-multcomp
-  r-plyr
  r-rms
  r-tram
  r-trtf
--- a/BioArchLinux/r-xts/PKGBUILD
+++ b/BioArchLinux/r-xts/PKGBUILD
@ -6,7 +6,7 @@ _pkgname=xts
 _pkgver=0.13.1
 pkgname=r-${_pkgname,,}
 pkgver=0.13.1
-pkgrel=2
+pkgrel=3
 pkgdesc='eXtensible Time Series'
 arch=('x86_64')
 url="https://cran.r-project.org/package=${_pkgname}"
@ -20,7 +20,6 @@ optdepends=(
  r-timedate
  r-timeseries
  r-tinytest
-  r-tis
  r-tseries
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")