r-diffustats: use metadata checks

BioArchLinux/r-diffustats/PKGBUILD

@@ -1,17 +1,16 @@
-# system requirements: GNU make
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=diffuStats
 _pkgver=1.22.0
 pkgname=r-${_pkgname,,}
-pkgver=1.22.0
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Diffusion scores on biological networks'
-arch=('x86_64')
-url="https://bioconductor.org/packages/${_pkgname}"
-license=('GPL')
+pkgdesc="Diffusion scores on biological networks"
+arch=(x86_64)
+url="https://bioconductor.org/packages/$_pkgname"
+license=(GPL3)
 depends=(
-  r
   r-checkmate
   r-expm
   r-igraph
@@ -20,7 +19,10 @@ depends=(
   r-rcpp
   r-rcpparmadillo
   r-rcppparallel
-  make
+)
+checkdepends=(
+  r-reshape2
+  r-testthat
 )
 optdepends=(
   r-biocstyle
@@ -31,17 +33,22 @@ optdepends=(
   r-reshape2
   r-rmarkdown
   r-testthat
-  r-utils
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('3ec742621089d9e8ad6607b9e99741148d978d9b998c31c2949b1d7228bada5f')
+md5sums=('7c47ae0431034f3de807ad1fa3684530')
+b2sums=('1e184621fd58891acbeb07c41cbb2ced11394db6aaa1d4133b57faf10bb84ab639fb1b99da8de4d01b58c7285feff1847a0a4c40250b86103c8851ed120ce754')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-diffustats/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-diffustats/lilac.yaml

@@ -1,7 +1,7 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: starsareintherose
-  email: kuoi@bioarchlinux.org
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-checkmate
 - r-expm
@@ -11,8 +11,12 @@ repo_depends:
 - r-rcpp
 - r-rcpparmadillo
 - r-rcppparallel
+repo_makedepends:
+- r-reshape2
+- r-testthat
 update_on:
-- regex: diffuStats_([\d._-]+).tar.gz
-  source: regex
-  url: https://bioconductor.org/packages/diffuStats
+- source: rpkgs
+  pkgname: diffuStats
+  repo: bioc
+  md5: true
 - alias: r