From af3a5baae16451841d6206b3a1c6a08ca5135d6c Mon Sep 17 00:00:00 2001
From: starsareintherose <starsareintherose@outlook.com>
Date: Mon, 23 Aug 2021 15:08:32 +0800
Subject: [PATCH] add iqtree

---
 iqtree/PKGBUILD   | 31 +++++++++++++++++++++++++++++++
 iqtree/lilac.py   | 10 ++++++++++
 iqtree/lilac.yaml |  8 ++++++++
 3 files changed, 49 insertions(+)
 create mode 100644 iqtree/PKGBUILD
 create mode 100644 iqtree/lilac.py
 create mode 100644 iqtree/lilac.yaml

diff --git a/iqtree/PKGBUILD b/iqtree/PKGBUILD
new file mode 100644
index 0000000000..84737d18bd
--- /dev/null
+++ b/iqtree/PKGBUILD
@@ -0,0 +1,31 @@
+# Maintainer: Dominik Schrempf <dominik dot schrempf at gmail dot com>
+
+# XXX: The following warning cannot be removed because CMAKE stores the build
+# directory in the executable 'iqtree'.
+
+# ==> WARNING: Package contains reference to $srcdir
+# usr/bin/iqtree
+
+pkgname=iqtree
+pkgver=2.1.2
+pkgrel=1
+pkgdesc="Efficient phylogenomic software by maximum likelihood; multicore version (OMP)"
+arch=(x86_64)
+url="http://www.iqtree.org/"
+license=('GPL2')
+depends=('cmake' 'boost' 'eigen' 'glibc' 'libstdc++5' 'zlib')
+source=("https://github.com/iqtree/iqtree2/archive/v${pkgver}.tar.gz")
+md5sums=('83e85d78b096b48607b7dbf91f8211a9')
+
+build() {
+  cd iqtree2-${pkgver}
+  mkdir -p build
+  cd build
+  cmake -DIQTREE_FLAGS=omp ..
+  make
+}
+
+package() {
+  cd iqtree2-${pkgver}
+  install -D -m 755 build/iqtree2 ${pkgdir}/usr/bin/iqtree2
+}
diff --git a/iqtree/lilac.py b/iqtree/lilac.py
new file mode 100644
index 0000000000..8c66f58ed6
--- /dev/null
+++ b/iqtree/lilac.py
@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
diff --git a/iqtree/lilac.yaml b/iqtree/lilac.yaml
new file mode 100644
index 0000000000..fc81778170
--- /dev/null
+++ b/iqtree/lilac.yaml
@@ -0,0 +1,8 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: iqtree/iqtree2
+    use_latest_release: true