r-mgm: use metadata checks

BioArchLinux/r-mgm/PKGBUILD

@@ -1,34 +1,43 @@
-# Maintainer: sukanka <su975853527@gmail.com>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: sukanka <su975853527@gmail.com>
 
 _pkgname=mgm
 _pkgver=1.2-14
 pkgname=r-${_pkgname,,}
-pkgver=1.2.14
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Estimating Time-Varying k-Order Mixed Graphical Models'
-arch=('any')
+pkgdesc="Estimating Time-Varying k-Order Mixed Graphical Models"
+arch=(any)
 url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+license=(GPL)
 depends=(
-  r
   r-glmnet
   r-gtools
   r-hmisc
   r-qgraph
   r-stringr
 )
+checkdepends=(
+  r-testthat
+)
 optdepends=(
   r-testthat
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('153028b85da8ceafb4bfaaf3c7fa410f')
 sha256sums=('fcdf895a6d782217e8705394a21f5803cbaccaefb94c5618b4ea6f6482dbb0c8')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-mgm/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-mgm/lilac.yaml

@@ -1,14 +1,18 @@
 build_prefix: extra-x86_64
 maintainers:
-  - github: sukanka
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
-  - r-glmnet
-  - r-gtools
-  - r-hmisc
-  - r-qgraph
-  - r-stringr
+- r-glmnet
+- r-gtools
+- r-hmisc
+- r-qgraph
+- r-stringr
+repo_makedepends:
+- r-testthat
 update_on:
-  - regex: mgm_([\d._-]+).tar.gz
-    source: regex
-    url: https://cran.r-project.org/package=mgm
-  - alias: r
+- source: rpkgs
+  pkgname: mgm
+  repo: cran
+  md5: true
+- alias: r