From b29e165090e6dec355d6a11171316a04eb2515ed Mon Sep 17 00:00:00 2001
From: starsareintherose <starsareintherose@outlook.com>
Date: Mon, 23 Aug 2021 01:22:37 +0800
Subject: [PATCH] add phylobayes

---
 phylobayes/PKGBUILD   | 32 ++++++++++++++++++++++++++++++++
 phylobayes/lilac.py   | 10 ++++++++++
 phylobayes/lilac.yaml |  8 ++++++++
 3 files changed, 50 insertions(+)
 create mode 100644 phylobayes/PKGBUILD
 create mode 100644 phylobayes/lilac.py
 create mode 100644 phylobayes/lilac.yaml

diff --git a/phylobayes/PKGBUILD b/phylobayes/PKGBUILD
new file mode 100644
index 0000000000..531422d9f0
--- /dev/null
+++ b/phylobayes/PKGBUILD
@@ -0,0 +1,32 @@
+# Maintainer: malacology
+# Contributor: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
+
+pkgname=phylobayes
+pkgver=4.1e
+pkgrel=1
+pkgdesc="phylogenetic reconstruction using infinite mixtures"
+arch=('i686' 'x86_64')
+url="https://github.com/bayesiancook/phylobayes"
+license=('custom')
+conflicts=('phylobayes-mpi')
+depends=('gcc-libs')
+source=("https://codeload.github.com/bayesiancook/phylobayes/tar.gz/refs/tags/v${pkgver}")
+md5sums=('b7e915ecc83f3991142218d09aefd8c8')
+
+build() {
+  cd $srcdir/${pkgname}-${pkgver}/sources
+
+  make
+}
+
+package() {
+  cd $srcdir/${pkgname}-${pkgver}/data
+
+  mkdir -p $pkgdir/usr/bin $pkgdir/usr/share/licenses/$pkgname
+
+  find -mindepth 1 -maxdepth 1 -type f -printf '%P\n' | while read file ; do
+    cp $file $pkgdir/usr/bin
+  done
+
+  echo 'unknown' > $pkgdir/usr/share/licenses/$pkgname/LICENSE
+}
diff --git a/phylobayes/lilac.py b/phylobayes/lilac.py
new file mode 100644
index 0000000000..8c66f58ed6
--- /dev/null
+++ b/phylobayes/lilac.py
@@ -0,0 +1,10 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
diff --git a/phylobayes/lilac.yaml b/phylobayes/lilac.yaml
new file mode 100644
index 0000000000..705edda98a
--- /dev/null
+++ b/phylobayes/lilac.yaml
@@ -0,0 +1,8 @@
+build_prefix: multilib
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: bayesiancook/phylobayes
+    use_latest_release: true