r-autonomics: use metadata checks

BioArchLinux/r-autonomics/PKGBUILD

@@ -3,16 +3,18 @@
 _pkgname=autonomics
 _pkgver=1.10.2
 pkgname=r-${_pkgname,,}
-pkgver=1.10.2
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Generifying and intuifying cross-platform omics analysis'
+pkgdesc="Generifying and intuifying cross-platform omics analysis"
-arch=('any')
+arch=(any)
-url="https://bioconductor.org/packages/${_pkgname}"
+url="https://bioconductor.org/packages/$_pkgname"
-license=('GPL')
+license=('GPL-3.0-only')
 depends=(
-  r
   r-abind
-  r-assertive
+  r-assertive.base
+  r-assertive.files
+  r-assertive.numbers
+  r-assertive.sets
   r-biocfilecache
   r-biocgenerics
   r-bit64
@@ -51,10 +53,8 @@ optdepends=(
   r-knitr
   r-lme4
   r-lmertest
-  r-mass
   r-mixomics
   r-mpm
-  r-nlme
   r-org.hs.eg.db
   r-org.mm.eg.db
   r-rcurl
@@ -68,14 +68,15 @@ optdepends=(
   r-testthat
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('a9a63c09f9f4de533f92c8b82fa3f2821f532fd0edb4e5ba467d6fb327d30fb2')
+md5sums=('9034c755764d54d8bf0eb0e330f4e54f')
+b2sums=('ed49786ceee54208e06c3447dc00f6babcafbc68c339f2bbd2fabc632f9311a0173abf5ba7353f128d42f95710e3dfc25465a606ad1c889200e3132b4329ac57')
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-autonomics/lilac.py

@@ -1,12 +1,13 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
+    r_pre_build(_G)
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
 
 def post_build():
     git_pkgbuild_commit()

BioArchLinux/r-autonomics/lilac.yaml

@@ -4,7 +4,10 @@ maintainers:
   email: kuoi@bioarchlinux.org
 repo_depends:
 - r-abind
-- r-assertive
+- r-assertive.base
+- r-assertive.files
+- r-assertive.numbers
+- r-assertive.sets
 - r-biocfilecache
 - r-biocgenerics
 - r-bit64
@@ -30,7 +33,8 @@ repo_depends:
 - r-summarizedexperiment
 - r-tidyr
 update_on:
-- regex: autonomics_([\d._-]+).tar.gz
+- source: rpkgs
-  source: regex
+  pkgname: autonomics
-  url: https://bioconductor.org/packages/autonomics
+  repo: bioc
+  md5: true
 - alias: r