From b4c89661725c3d4ecdfce9c3c03c9e202b344c59 Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Thu, 19 Dec 2024 20:59:47 +0200
Subject: [PATCH] r-biocsingular: fix makedepends

---
 BioArchLinux/r-biocsingular/PKGBUILD   | 17 +++++++----------
 BioArchLinux/r-biocsingular/lilac.yaml |  1 +
 2 files changed, 8 insertions(+), 10 deletions(-)

diff --git a/BioArchLinux/r-biocsingular/PKGBUILD b/BioArchLinux/r-biocsingular/PKGBUILD
index 0dcf44adf2..8388116924 100644
--- a/BioArchLinux/r-biocsingular/PKGBUILD
+++ b/BioArchLinux/r-biocsingular/PKGBUILD
@@ -2,10 +2,10 @@
 # Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=BiocSingular
-_pkgver=1.20.0
+_pkgver=1.22.0
 pkgname=r-${_pkgname,,}
 pkgver=${_pkgver//-/.}
-pkgrel=1
+pkgrel=0
 pkgdesc="Singular Value Decomposition for Bioconductor Packages"
 arch=(x86_64)
 url="https://bioconductor.org/packages/$_pkgname"
@@ -21,6 +21,9 @@ depends=(
   r-s4vectors
   r-scaledmatrix
 )
+makedepends=(
+  r-assorthead
+)
 checkdepends=(
   r-testthat
 )
@@ -32,14 +35,8 @@ optdepends=(
   r-testthat
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-md5sums=('d5a29e6d4dad421ec381313627270a0e')
-b2sums=('53c788e4003bbb2fdf9880d430033f1bfe5dafe0e117e0e48e6ad5443c4fcd62716330b79563f3318c9ca39b10a62e7394f46cf597225d38c4b23a5e3399194a')
-
-prepare() {
-  # skip test that makes a coredump
-  sed -i '/"scale calculations work correctly"/a\ \ \ \ skip("dumps core")' \
-      "$_pkgname/tests/testthat/test-utils.R"
-}
+md5sums=('bb704ac1d36b56a1b8ea141ffad65ab6')
+b2sums=('a30a62e3e89de60baceafeb6f2dae274951d5d0ba6ca9d1db10f9b8538ae39108535b768f89ea5758a7c1fc495326a5ff81f5eedfd81a6a4fd54cb42e97987f1')
 
 build() {
   mkdir build
diff --git a/BioArchLinux/r-biocsingular/lilac.yaml b/BioArchLinux/r-biocsingular/lilac.yaml
index 100bcbee69..f685630adc 100644
--- a/BioArchLinux/r-biocsingular/lilac.yaml
+++ b/BioArchLinux/r-biocsingular/lilac.yaml
@@ -13,6 +13,7 @@ repo_depends:
 - r-s4vectors
 - r-scaledmatrix
 repo_makedepends:
+- r-assorthead
 - r-testthat
 update_on:
 - source: rpkgs