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This reverts commit ad9d680e29
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# Maintainer: Kiri <kiri@vern.cc>
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# Contributor: wangzhichao <wangzhichao1990@126.com>
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pkgname=bio-tbtools
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_pkgname=tbtools
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pkgver=2.106
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pkgrel=1
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epoch=1
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pkgdesc='GUI/CommandLine Tool Box for biologistists to utilize NGS data. \
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https://doi.org/10.1016/j.molp.2023.09.010'
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arch=('x86_64')
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url='https://github.com/CJ-Chen/TBtools-II'
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license=('unknown')
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depends=('java-runtime>=11'
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'bash')
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makedepends=('unzip'
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'gendesk')
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optdepends=('blast+: BLAST support'
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'diamond: quick blast(needed in quick MCScanx scan) support'
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'mcscanx: collinear scan support'
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'hmmer: HMM Search support'
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'muscle: align support'
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'trimal: large scale align support'
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'iqtree: maximum likelihood phylogenomic tree support'
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'kaks_calculator: kaks calculate support')
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source=("https://github.com/CJ-Chen/TBtools-II/releases/download/${pkgver}/TBtools_JRE1.6.jar")
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sha256sums=('62047368b209763ed91c31910217c4292ed603e2dfdbc23f5949bfbda8003195')
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prepare() {
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# generate /usr/bin file
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printf '#!/usr/bin/sh\nexec java -jar /usr/share/bio-tbtools/tbtools*.jar "$@"\n'>${srcdir}/${_pkgname}
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# generate desk entry
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gendesk -f -n --pkgname "${_pkgname}" --pkgdesc "${pkgdesc}" --exec="${_pkgname}" --name="${_pkgname}" --categories="Science"
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}
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package() {
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install -Dm 755 ${srcdir}/${_pkgname} ${pkgdir}/usr/bin/${_pkgname}
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install -Dm 644 ${srcdir}/${_pkgname}.desktop ${pkgdir}/usr/share/applications/${_pkgname}.desktop
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install -Dm 755 ${srcdir}/TBtools*.jar ${pkgdir}/usr/share/${pkgname}/${_pkgname}.jar
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install -Dm 644 ${srcdir}/Icons/TBtoolsLogo.png ${pkgdir}/usr/share/icons/hicolor/720x720/apps/${_pkgname}.png
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install -Dm 644 ${srcdir}/Icons/TBtoolsLogo16x16.png ${pkgdir}/usr/share/icons/hicolor/16x16/apps/${_pkgname}.png
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}
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maintainers:
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- github: kiri2002
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email: kiri@vern.cc
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build_prefix: extra-x86_64
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pre_build_script: |
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update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
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post_build_script: |
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git_pkgbuild_commit()
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update_aur_repo()
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update_on:
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- source: github
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github: CJ-Chen/TBtools-II
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use_max_tag: true
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