From 98904f3658b02469a6fde26fddb7d333eba7ef8b Mon Sep 17 00:00:00 2001 From: starsareintherose Date: Mon, 3 Jan 2022 22:03:27 +0000 Subject: [PATCH 01/25] change source --- BioArchLinux/rasp/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/rasp/PKGBUILD b/BioArchLinux/rasp/PKGBUILD index c5366ef8cf..d02532e471 100644 --- a/BioArchLinux/rasp/PKGBUILD +++ b/BioArchLinux/rasp/PKGBUILD @@ -13,7 +13,7 @@ depends=( 'wine_gecko' 'wine-mono' ) -source=("http://mnh.scu.edu.cn/soft/blog/RASP/RASP_Win64_${pkgver}.zip" "rasp.desktop" "rasp.png") +source=("https://sourceforge.net/projects/rasp2/files/RASP_Win64_${pkgver}.zip" "rasp.desktop" "rasp.png") md5sums=('7d39376e5a8ef44eef467ab0a511f2e0' '4304aead6dcffd521664dbc186997ec8' '5b403896e05a3da471be404bb9afe053') From 88c676e6d1b1a62a44d8fdf0c4d0fdfbc9dc53cd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Tue, 4 Jan 2022 06:30:00 +0000 Subject: [PATCH 02/25] Update lilac.yaml --- BioArchLinux/mummer4/lilac.yaml | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/BioArchLinux/mummer4/lilac.yaml b/BioArchLinux/mummer4/lilac.yaml index f6d2350b77..365e00990c 100644 --- a/BioArchLinux/mummer4/lilac.yaml +++ b/BioArchLinux/mummer4/lilac.yaml @@ -3,8 +3,6 @@ maintainers: - github: michaelgelliot email: m.g.elliot@rug.nl update_on: - - source: regex - regex: v(\d+.\d+.\w+) - url: https://github.com/mummer4/mummer/releases - - + - source: github + github: mummer4/mummer + use_latest_release: true From d0de0a4bb005ff5a6797a7d694b2b7b118d15b5d Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Tue, 4 Jan 2022 19:50:33 +0800 Subject: [PATCH 03/25] gsalign: auto updated to 1.0.22-2 --- BioArchLinux/gsalign/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/gsalign/PKGBUILD b/BioArchLinux/gsalign/PKGBUILD index 274a937705..9bb4630587 100644 --- a/BioArchLinux/gsalign/PKGBUILD +++ b/BioArchLinux/gsalign/PKGBUILD @@ -4,7 +4,7 @@ pkgname=gsalign pkgnamecaps=GSAlign pkgver=1.0.22 -pkgrel=1 +pkgrel=2 pkgdesc='An ultra-fast sequence alignment algorithm for intra-species genome comparison. https://doi.org/10.1186/s12864-020-6569-1' arch=('x86_64') url="https://github.com/hsinnan75/${pkgnamecaps}" From 31ad6eb609819df681085b3b4f3233c56c0f8c93 Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Tue, 4 Jan 2022 19:51:12 +0800 Subject: [PATCH 04/25] minimap2: auto updated to 2.24-2 --- BioArchLinux/minimap2/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/minimap2/PKGBUILD b/BioArchLinux/minimap2/PKGBUILD index 98e77b5e11..9c3cecdbfc 100644 --- a/BioArchLinux/minimap2/PKGBUILD +++ b/BioArchLinux/minimap2/PKGBUILD @@ -3,7 +3,7 @@ pkgname=minimap2 pkgver=2.24 -pkgrel=1 +pkgrel=2 pkgdesc='A versatile pairwise aligner for genomic and spliced nucleotide sequences. https://doi.org/10.1093/bioinformatics/bty191' arch=('x86_64') url="https://github.com/lh3/${pkgname}" From df1525c845738c42e2865b29ab6c2d49fc11494a Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Tue, 4 Jan 2022 19:52:34 +0800 Subject: [PATCH 05/25] mummer4: auto updated to 4.0.0rc1-2 --- BioArchLinux/mummer4/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/mummer4/PKGBUILD b/BioArchLinux/mummer4/PKGBUILD index 4b8be47a28..5f05f851d2 100644 --- a/BioArchLinux/mummer4/PKGBUILD +++ b/BioArchLinux/mummer4/PKGBUILD @@ -3,7 +3,7 @@ pkgname=mummer4 pkgver=4.0.0rc1 -pkgrel=1 +pkgrel=2 pkgdesc="A fast and versatile genome alignment system. https://doi.org/10.1371/journal.pcbi.1005944" arch=('x86_64') url="https://mummer4.github.io/" From 841c766dcdb698ff389eb4fefe3fff7b846124ce Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Tue, 4 Jan 2022 12:46:12 +0000 Subject: [PATCH 06/25] fix the depends of lilac.yaml --- BioArchLinux/lra/lilac.yaml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/BioArchLinux/lra/lilac.yaml b/BioArchLinux/lra/lilac.yaml index b38ada0384..b0897d72ba 100644 --- a/BioArchLinux/lra/lilac.yaml +++ b/BioArchLinux/lra/lilac.yaml @@ -6,4 +6,5 @@ update_on: - source: github github: ChaissonLab/LRA use_max_tag: true - +repo_depends: + - htslib From 704a153f8ff1eb9ae752d4c497b8eb1944c5225a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:06:18 +0000 Subject: [PATCH 07/25] Create lilac.yaml --- BioArchLinux/migrate-n/lilac.yaml | 8 ++++++++ 1 file changed, 8 insertions(+) create mode 100644 BioArchLinux/migrate-n/lilac.yaml diff --git a/BioArchLinux/migrate-n/lilac.yaml b/BioArchLinux/migrate-n/lilac.yaml new file mode 100644 index 0000000000..43015b8439 --- /dev/null +++ b/BioArchLinux/migrate-n/lilac.yaml @@ -0,0 +1,8 @@ +maintainers: + - github: michael.g.elliot + email: m.g.elliot@rug.nl +build_prefix: extra-x86_64 +update_on: + - source: regex + url: "https://peterbeerli.com/migrate-html5/download_version4/" + regex: migrate-(\d+.\d+.\d+).src.tar.gz From 8fde3123b3fe35cc4c8d749b23ec575d2d4831b4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:06:39 +0000 Subject: [PATCH 08/25] Create lilac.py --- BioArchLinux/migrate-n/lilac.py | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 BioArchLinux/migrate-n/lilac.py diff --git a/BioArchLinux/migrate-n/lilac.py b/BioArchLinux/migrate-n/lilac.py new file mode 100644 index 0000000000..8c66f58ed6 --- /dev/null +++ b/BioArchLinux/migrate-n/lilac.py @@ -0,0 +1,10 @@ +#!/usr/bin/env python3 + +from lilaclib import * + +def pre_build(): + update_pkgver_and_pkgrel(_G.newver.lstrip('v')) + +def post_build(): + git_add_files('PKGBUILD') + git_commit() From 3d9635ecdb4ddb432bdec7b7c49909add834353e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:07:28 +0000 Subject: [PATCH 09/25] Create lilac.yaml --- BioArchLinux/migrate-n-mt/lilac.yaml | 8 ++++++++ 1 file changed, 8 insertions(+) create mode 100644 BioArchLinux/migrate-n-mt/lilac.yaml diff --git a/BioArchLinux/migrate-n-mt/lilac.yaml b/BioArchLinux/migrate-n-mt/lilac.yaml new file mode 100644 index 0000000000..43015b8439 --- /dev/null +++ b/BioArchLinux/migrate-n-mt/lilac.yaml @@ -0,0 +1,8 @@ +maintainers: + - github: michael.g.elliot + email: m.g.elliot@rug.nl +build_prefix: extra-x86_64 +update_on: + - source: regex + url: "https://peterbeerli.com/migrate-html5/download_version4/" + regex: migrate-(\d+.\d+.\d+).src.tar.gz From eab9d2bee2fd2ec20e0e310ad66e70f96fe3498a Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:07:44 +0000 Subject: [PATCH 10/25] Create lilac.py --- BioArchLinux/migrate-n-mt/lilac.py | 8 ++++++++ 1 file changed, 8 insertions(+) create mode 100644 BioArchLinux/migrate-n-mt/lilac.py diff --git a/BioArchLinux/migrate-n-mt/lilac.py b/BioArchLinux/migrate-n-mt/lilac.py new file mode 100644 index 0000000000..43015b8439 --- /dev/null +++ b/BioArchLinux/migrate-n-mt/lilac.py @@ -0,0 +1,8 @@ +maintainers: + - github: michael.g.elliot + email: m.g.elliot@rug.nl +build_prefix: extra-x86_64 +update_on: + - source: regex + url: "https://peterbeerli.com/migrate-html5/download_version4/" + regex: migrate-(\d+.\d+.\d+).src.tar.gz From f92a91593fb474673496f951e3a7ad9423eddfba Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:08:19 +0000 Subject: [PATCH 11/25] Create lilac.yaml --- BioArchLinux/migrate-n-mpi/lilac.yaml | 8 ++++++++ 1 file changed, 8 insertions(+) create mode 100644 BioArchLinux/migrate-n-mpi/lilac.yaml diff --git a/BioArchLinux/migrate-n-mpi/lilac.yaml b/BioArchLinux/migrate-n-mpi/lilac.yaml new file mode 100644 index 0000000000..43015b8439 --- /dev/null +++ b/BioArchLinux/migrate-n-mpi/lilac.yaml @@ -0,0 +1,8 @@ +maintainers: + - github: michael.g.elliot + email: m.g.elliot@rug.nl +build_prefix: extra-x86_64 +update_on: + - source: regex + url: "https://peterbeerli.com/migrate-html5/download_version4/" + regex: migrate-(\d+.\d+.\d+).src.tar.gz From cb616b45768a3c0b86de6b8baeb58b79f6cd72a8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:08:59 +0000 Subject: [PATCH 12/25] Create lilac.py --- BioArchLinux/migrate-n-mpi/lilac.py | 10 ++++++++++ 1 file changed, 10 insertions(+) create mode 100644 BioArchLinux/migrate-n-mpi/lilac.py diff --git a/BioArchLinux/migrate-n-mpi/lilac.py b/BioArchLinux/migrate-n-mpi/lilac.py new file mode 100644 index 0000000000..8c66f58ed6 --- /dev/null +++ b/BioArchLinux/migrate-n-mpi/lilac.py @@ -0,0 +1,10 @@ +#!/usr/bin/env python3 + +from lilaclib import * + +def pre_build(): + update_pkgver_and_pkgrel(_G.newver.lstrip('v')) + +def post_build(): + git_add_files('PKGBUILD') + git_commit() From 55b113c2e2e1984a28bb8965d54e5fa276de0d28 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:09:51 +0000 Subject: [PATCH 13/25] Update lilac.py --- BioArchLinux/migrate-n-mt/lilac.py | 18 ++++++++++-------- 1 file changed, 10 insertions(+), 8 deletions(-) diff --git a/BioArchLinux/migrate-n-mt/lilac.py b/BioArchLinux/migrate-n-mt/lilac.py index 43015b8439..8c66f58ed6 100644 --- a/BioArchLinux/migrate-n-mt/lilac.py +++ b/BioArchLinux/migrate-n-mt/lilac.py @@ -1,8 +1,10 @@ -maintainers: - - github: michael.g.elliot - email: m.g.elliot@rug.nl -build_prefix: extra-x86_64 -update_on: - - source: regex - url: "https://peterbeerli.com/migrate-html5/download_version4/" - regex: migrate-(\d+.\d+.\d+).src.tar.gz +#!/usr/bin/env python3 + +from lilaclib import * + +def pre_build(): + update_pkgver_and_pkgrel(_G.newver.lstrip('v')) + +def post_build(): + git_add_files('PKGBUILD') + git_commit() From 50543142d277204ee4beee99e63d63df6ca712cf Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:12:29 +0000 Subject: [PATCH 14/25] Update lilac.yaml --- BioArchLinux/bayesass/lilac.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/BioArchLinux/bayesass/lilac.yaml b/BioArchLinux/bayesass/lilac.yaml index 76daeb92bb..933072ba14 100644 --- a/BioArchLinux/bayesass/lilac.yaml +++ b/BioArchLinux/bayesass/lilac.yaml @@ -3,7 +3,7 @@ maintainers: - github: michael.g.elliot email: m.g.elliot@rug.nl update_on: - - source: github - github: Fbrannala/BA3 - use_max_tag: true + - source: regex + regex: (\d+.\d+.\d+.\d+) + url: https://github.com/brannala/BA3/tags From f0b47a59ddeac35e42f6710db98c68a7da98e78e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 03:17:50 +0000 Subject: [PATCH 15/25] Update lilac.yaml --- BioArchLinux/lra/lilac.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/lra/lilac.yaml b/BioArchLinux/lra/lilac.yaml index b0897d72ba..c1ee029a6c 100644 --- a/BioArchLinux/lra/lilac.yaml +++ b/BioArchLinux/lra/lilac.yaml @@ -5,6 +5,6 @@ maintainers: update_on: - source: github github: ChaissonLab/LRA - use_max_tag: true + use_latest_release: true repo_depends: - htslib From 6e35928ba7efab40f1441083134fb6864e241757 Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 5 Jan 2022 13:52:08 +0800 Subject: [PATCH 16/25] lastz_backtobackgaps: auto updated to 1.04.15-2 --- BioArchLinux/lastz_backtobackgaps/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/lastz_backtobackgaps/PKGBUILD b/BioArchLinux/lastz_backtobackgaps/PKGBUILD index b54ee61244..9f420779c9 100644 --- a/BioArchLinux/lastz_backtobackgaps/PKGBUILD +++ b/BioArchLinux/lastz_backtobackgaps/PKGBUILD @@ -4,7 +4,7 @@ pkgname=lastz_backtobackgaps _pkgname=lastz pkgver=1.04.15 -pkgrel=1 +pkgrel=2 pkgdesc="Pairwise DNA sequence aligner. This version allows back to back gaps (adjacent indels) but might break backward compatibility with lastZ and BLASTZ." arch=('x86_64') url="https://lastz.github.io/lastz/" From f569ec40f87b9f3ce3c0e9432bf15cbbee23b524 Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 5 Jan 2022 13:53:11 +0800 Subject: [PATCH 17/25] migrate-n-mt: auto updated to 4.4.4-2 --- BioArchLinux/migrate-n-mt/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/migrate-n-mt/PKGBUILD b/BioArchLinux/migrate-n-mt/PKGBUILD index 159cfa034b..6097387894 100644 --- a/BioArchLinux/migrate-n-mt/PKGBUILD +++ b/BioArchLinux/migrate-n-mt/PKGBUILD @@ -4,7 +4,7 @@ pkgname=migrate-n-mt _pkgname=migrate pkgver=4.4.4 -pkgrel=1 +pkgrel=2 pkgdesc="Bayesian estimation of effective population sizes, migration rates, and population divergences or admixture, multithreaded version" arch=('x86_64') url="https://peterbeerli.com/migrate-html5" From b52b0ce4fe4abe0b09e3cdc62c51f02b80f3369a Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 5 Jan 2022 13:54:07 +0800 Subject: [PATCH 18/25] migrate-n: auto updated to 4.4.4-2 --- BioArchLinux/migrate-n/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/migrate-n/PKGBUILD b/BioArchLinux/migrate-n/PKGBUILD index 23c7d19cd2..7933014006 100644 --- a/BioArchLinux/migrate-n/PKGBUILD +++ b/BioArchLinux/migrate-n/PKGBUILD @@ -4,7 +4,7 @@ pkgname=migrate-n _pkgname=migrate pkgver=4.4.4 -pkgrel=1 +pkgrel=2 pkgdesc="Bayesian estimation of effective population sizes, migration rates, and population divergences or admixture, single CPU version" arch=('x86_64') url="https://peterbeerli.com/migrate-html5" From 081d0efe6090de7991591ff94076b84f7532792c Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 5 Jan 2022 13:54:59 +0800 Subject: [PATCH 19/25] lastz: auto updated to 1.04.15-2 --- BioArchLinux/lastz/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/lastz/PKGBUILD b/BioArchLinux/lastz/PKGBUILD index 2fae1334d2..f2e2f705e8 100644 --- a/BioArchLinux/lastz/PKGBUILD +++ b/BioArchLinux/lastz/PKGBUILD @@ -3,7 +3,7 @@ pkgname=lastz pkgver=1.04.15 -pkgrel=1 +pkgrel=2 pkgdesc="Pairwise DNA sequence aligner" arch=('x86_64') url="https://lastz.github.io/lastz/" From ad5a371755974de8b8855415a98ffab558fbcd7f Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 5 Jan 2022 13:55:40 +0800 Subject: [PATCH 20/25] libarmadillo: auto updated to 10.8.0-2 --- BioArchLinux/libarmadillo/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/libarmadillo/PKGBUILD b/BioArchLinux/libarmadillo/PKGBUILD index 1a2c99447c..da61e2cbb4 100644 --- a/BioArchLinux/libarmadillo/PKGBUILD +++ b/BioArchLinux/libarmadillo/PKGBUILD @@ -5,7 +5,7 @@ pkgname=libarmadillo _pkgname=armadillo sfname=arma pkgver=10.8.0 -pkgrel=1 +pkgrel=2 pkgdesc="C++ library for linear algebra & scientific computing" arch=('x86_64') url="http://${sfname}.sourceforge.net/" From 2a01250789d287cf97c5aff72c2e243fbbbe5ba1 Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 5 Jan 2022 13:57:05 +0800 Subject: [PATCH 21/25] migrate-n-mpi: auto updated to 4.4.4-2 --- BioArchLinux/migrate-n-mpi/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/migrate-n-mpi/PKGBUILD b/BioArchLinux/migrate-n-mpi/PKGBUILD index 6a391a15d2..fe5745807c 100644 --- a/BioArchLinux/migrate-n-mpi/PKGBUILD +++ b/BioArchLinux/migrate-n-mpi/PKGBUILD @@ -4,7 +4,7 @@ pkgname=migrate-n-mpi _pkgname=migrate pkgver=4.4.4 -pkgrel=1 +pkgrel=2 pkgdesc="Bayesian estimation of effective population sizes, migration rates, and population divergences or admixture, multithreaded version" arch=('x86_64') url="https://peterbeerli.com/migrate-html5" From 5b35f05eab9d1cc0fa87cee0cd50f8893ced49c7 Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 5 Jan 2022 13:58:06 +0800 Subject: [PATCH 22/25] lra: auto updated to 1.3.2-2 --- BioArchLinux/lra/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/lra/PKGBUILD b/BioArchLinux/lra/PKGBUILD index a83255bdf0..0d26ab20a8 100644 --- a/BioArchLinux/lra/PKGBUILD +++ b/BioArchLinux/lra/PKGBUILD @@ -3,7 +3,7 @@ pkgname=lra pkgver=1.3.2 -pkgrel=1 +pkgrel=2 pkgdesc='A long read aligner for sequences and contigs. https://doi.org/10.1371/journal.pcbi.1009078' arch=('x86_64') url="https://github.com/ChaissonLab/${pkgname^^}" From 5f411ae2b8b350c891335eebb434f619ae27834c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 10:36:08 +0000 Subject: [PATCH 23/25] Update lilac.yaml --- BioArchLinux/bayesass/lilac.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/BioArchLinux/bayesass/lilac.yaml b/BioArchLinux/bayesass/lilac.yaml index 933072ba14..274ed3864f 100644 --- a/BioArchLinux/bayesass/lilac.yaml +++ b/BioArchLinux/bayesass/lilac.yaml @@ -4,6 +4,6 @@ maintainers: email: m.g.elliot@rug.nl update_on: - source: regex - regex: (\d+.\d+.\d+.\d+) - url: https://github.com/brannala/BA3/tags + regex: Version (\d+.\d+.\d+.\d+) + url: https://github.com/brannala/BA3/releases From 66dfe47b206fd0a63cecdbf448d9d6a73d4fc1d8 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?=E6=9C=88=E5=AD=A3=E8=8A=B1=E4=B8=AD=E7=9A=84=E6=98=9F?= =?UTF-8?q?=E8=BE=B0?= Date: Wed, 5 Jan 2022 10:38:22 +0000 Subject: [PATCH 24/25] fix the depends --- BioArchLinux/phyx/lilac.yaml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/BioArchLinux/phyx/lilac.yaml b/BioArchLinux/phyx/lilac.yaml index ee133446d0..d49facf946 100644 --- a/BioArchLinux/phyx/lilac.yaml +++ b/BioArchLinux/phyx/lilac.yaml @@ -6,4 +6,5 @@ update_on: - source: github github: FePhyFoFum/phyx use_max_tag: true - +repo_depends: + - libarmadillo From 7e89ade9dd60cfa29a9664c557a8be86366b057c Mon Sep 17 00:00:00 2001 From: BioArchLinuxBot Date: Wed, 5 Jan 2022 19:51:46 +0800 Subject: [PATCH 25/25] bayesass: auto updated to 3.0.4.2-2 --- BioArchLinux/bayesass/PKGBUILD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/BioArchLinux/bayesass/PKGBUILD b/BioArchLinux/bayesass/PKGBUILD index bd60460add..b202492169 100644 --- a/BioArchLinux/bayesass/PKGBUILD +++ b/BioArchLinux/bayesass/PKGBUILD @@ -4,7 +4,7 @@ pkgname=bayesass _pkgname=BA3 pkgver=3.0.4.2 -pkgrel=1 +pkgrel=2 pkgdesc="Software for inferring proportions of recent migrants among populations using multilocus genotype data." arch=('x86_64') url="https://github.com/brannala/${_pkgname}"