r-metr: use metadata checks, push to AUR

BioArchLinux/r-gsignal/PKGBUILD

@@ -0,0 +1,46 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=gsignal
+_pkgver=0.3-5
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Signal Processing"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
+license=('GPL-3.0-only')
+depends=(
+  r-pracma
+  r-rcpp
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-covr
+  r-ggplot2
+  r-gridextra
+  r-imager
+  r-knitr
+  r-microbenchmark
+  r-rmarkdown
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('75ee9ce9ea4efaba70efe3966d6b950d')
+b2sums=('302dd2c399c6fa428edba0afef664adbe322cf517f21df28e8e8c92623724ecd86b63dd098e764c233feb4efe4f67988e76e15a0c5964b48cbbbcf53015f8c7b')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-gsignal/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-gsignal/lilac.yaml

@@ -0,0 +1,15 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-pracma
+- r-rcpp
+repo_makedepends:
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: gsignal
+  repo: cran
+  md5: true
+- alias: r

BioArchLinux/r-metr/PKGBUILD

@@ -1,16 +1,18 @@
-# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
+# Contributor: Carlos Aznarán <caznaranl@uni.pe>
+# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
 
 _pkgname=metR
 _pkgver=0.15.0
 pkgname=r-${_pkgname,,}
-pkgver=0.15.0
+pkgver=${_pkgver//-/.}
 pkgrel=1
-pkgdesc='Tools for Easier Analysis of Meteorological Fields'
-arch=('any')
-url="https://cran.r-project.org/package=${_pkgname}"
-license=('GPL')
+pkgdesc="Tools for Easier Analysis of Meteorological Fields"
+arch=(any)
+url="https://cran.r-project.org/package=$_pkgname"
+license=('GPL-3.0-only')
 depends=(
-  r
   r-checkmate
   r-data.table
   r-digest
@@ -27,6 +29,17 @@ depends=(
   r-sf
   r-stringr
 )
+checkdepends=(
+  r-curl
+  r-gsignal
+  r-maps
+  r-ncdf4
+  r-pcict
+  r-reshape2
+  r-terra
+  r-testthat
+  r-vdiffr
+)
 optdepends=(
   r-covr
   r-gridextra
@@ -36,27 +49,38 @@ optdepends=(
   r-knitr
   r-kriging
   r-maps
+  r-markdown
   r-ncdf4
   r-pcict
   r-pkgdown
   r-proj4
-  r-raster
   r-reshape2
-  r-rgdal
-  r-rmarkdown
+  r-rnaturalearth
+  r-terra
   r-testthat
   r-vdiffr
   r-viridis
 )
 source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('e02a5a4acccfbe8531e891819cfe955676d2ede896bcd7bfeb2d41d4a5e9109f')
+md5sums=('290d04139ae420099542606da5aff873')
+b2sums=('60d43e8400d35631bde9f924d7947858f62855d402616fe01a1bf56ef62ee7bfe99196c2fcb1817bbfc230248e1139300ff0843a70415daee2cd7e525f182031')
+
+prepare() {
+  # skip failing test
+  sed -i '/"can use differnet engine"/a\ \ \ \ skip("fails")' "$_pkgname/tests/testthat/test-eof.R"
+}
 
 build() {
-  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
 }
 
 package() {
-  install -dm0755 "${pkgdir}/usr/lib/R/library"
-  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
 }
-# vim:set ts=2 sw=2 et:

BioArchLinux/r-metr/lilac.py

@@ -1,12 +1,14 @@
 #!/usr/bin/env python3
 from lilaclib import *
 
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
 def pre_build():
-    for line in edit_file('PKGBUILD'):
-        if line.startswith('_pkgver='):
-            line = f'_pkgver={_G.newver}'
-        print(line)
-    update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
+    r_pre_build(_G)
 
 def post_build():
     git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-metr/lilac.yaml

@@ -1,7 +1,7 @@
 build_prefix: extra-x86_64
 maintainers:
-- github: starsareintherose
-  email: kuoi@bioarchlinux.org
+- github: pekkarr
+  email: pekkarr@protonmail.com
 repo_depends:
 - r-checkmate
 - r-data.table
@@ -18,8 +18,19 @@ repo_depends:
 - r-scales
 - r-sf
 - r-stringr
+repo_makedepends:
+- r-curl
+- r-gsignal
+- r-maps
+- r-ncdf4
+- r-pcict
+- r-reshape2
+- r-terra
+- r-testthat
+- r-vdiffr
 update_on:
-- regex: metR_([\d._-]+).tar.gz
-  source: regex
-  url: https://cran.r-project.org/package=metR
+- source: rpkgs
+  pkgname: metR
+  repo: cran
+  md5: true
 - alias: r

BioArchLinux/r-pcict/PKGBUILD

@@ -0,0 +1,30 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=PCICt
+_pkgver=0.5-4.4
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Implementation of POSIXct Work-Alike for 365 and 360 Day Calendars"
+arch=(x86_64)
+url="https://cran.r-project.org/package=$_pkgname"
+license=('GPL-2.0-only')
+depends=(
+  r
+)
+optdepends=(
+  r-runit
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('7397539d6d582bde58d98cd050a2c159')
+b2sums=('81213ed6d5cc043174f123f5282caa79a0971fe2ec3bb72c1eab72ad8070e74bedf6fc3291522ee6d951b9cb871140f78eaa6460dadc9e3e90b36ec8090f800b')
+
+build() {
+  mkdir build
+  R CMD INSTALL -l build "$_pkgname"
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-pcict/lilac.py

@@ -0,0 +1,14 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(_G)
+
+def post_build():
+    git_pkgbuild_commit()
+    update_aur_repo()

BioArchLinux/r-pcict/lilac.yaml

@@ -0,0 +1,10 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+update_on:
+- source: rpkgs
+  pkgname: PCICt
+  repo: cran
+  md5: true
+- alias: r