From baaf7a36410215d0f02b6246d4e198b90b2f314a Mon Sep 17 00:00:00 2001
From: Pekka Ristola <pekkarr@protonmail.com>
Date: Sun, 22 Dec 2024 19:52:20 +0200
Subject: [PATCH] r-gsva: fix depends

---
 BioArchLinux/r-gsva/PKGBUILD   | 9 +++++----
 BioArchLinux/r-gsva/lilac.yaml | 1 +
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/BioArchLinux/r-gsva/PKGBUILD b/BioArchLinux/r-gsva/PKGBUILD
index 4bb58ab0f7..10812dc2c4 100644
--- a/BioArchLinux/r-gsva/PKGBUILD
+++ b/BioArchLinux/r-gsva/PKGBUILD
@@ -1,10 +1,10 @@
 # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
 
 _pkgname=GSVA
-_pkgver=1.52.3
+_pkgver=2.0.3
 pkgname=r-${_pkgname,,}
 pkgver=${_pkgver//-/.}
-pkgrel=1
+pkgrel=0
 pkgdesc="Gene Set Variation Analysis for Microarray and RNA-Seq Data"
 arch=(x86_64)
 url="https://bioconductor.org/packages/$_pkgname"
@@ -13,6 +13,7 @@ depends=(
   r-biobase
   r-biocparallel
   r-biocsingular
+  r-cli
   r-delayedarray
   r-delayedmatrixstats
   r-gseabase
@@ -47,8 +48,8 @@ optdepends=(
   r-shinyjs
 )
 source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-md5sums=('afcaf521232af9b0cfcfa2f7060ae946')
-b2sums=('1df92d67e3d11b4b8418b815bb24ffe84635dd011eae8bdfe3056fd332e8a1a073e4716cc93d1c8790eb0cd92a46353d761af77641e87f69ebbfb5177387ee63')
+md5sums=('aaed5eadb8d2591fd11b1b8a724c7589')
+b2sums=('3fcd5aa9086376e87e6f4ab4bc193e83b7dcf0ff279474bdf4c06b53b992f2d0f40a91afb0a8e63fc5b04fa175b48d6b9e55e633f0c107148cfb9a1ba0e4705e')
 
 build() {
   mkdir build
diff --git a/BioArchLinux/r-gsva/lilac.yaml b/BioArchLinux/r-gsva/lilac.yaml
index 1db999afce..6f981c85de 100644
--- a/BioArchLinux/r-gsva/lilac.yaml
+++ b/BioArchLinux/r-gsva/lilac.yaml
@@ -6,6 +6,7 @@ repo_depends:
 - r-biobase
 - r-biocparallel
 - r-biocsingular
+- r-cli
 - r-delayedarray
 - r-delayedmatrixstats
 - r-gseabase