From baeb1518057fae74b63569637d7916671b12daa2 Mon Sep 17 00:00:00 2001
From: kbipinkumar <kbipinkumar@users.noreply.github.com>
Date: Sun, 25 Aug 2024 21:30:11 +0530
Subject: [PATCH] python-isal: fix build for version 1.7.0

---
 BioArchLinux/abpoa/relax-cython-dep.patch | 19 +++++++++++++++++++
 BioArchLinux/python-isal/PKGBUILD         | 14 ++++++++------
 2 files changed, 27 insertions(+), 6 deletions(-)
 create mode 100644 BioArchLinux/abpoa/relax-cython-dep.patch

diff --git a/BioArchLinux/abpoa/relax-cython-dep.patch b/BioArchLinux/abpoa/relax-cython-dep.patch
new file mode 100644
index 0000000000..523901d213
--- /dev/null
+++ b/BioArchLinux/abpoa/relax-cython-dep.patch
@@ -0,0 +1,19 @@
+Description: relax cython dependency to tolerate version 3.
+ Older versions are no longer available in Debian.
+
+Author: Étienne Mollier <emollier@debian.org>
+Forwarded: not-needed
+Last-Update: 2024-07-20
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- abpoa.orig/setup.py
++++ abpoa/setup.py
+@@ -69,7 +69,7 @@
+     author_email = "gaoy1@chop.edu",
+     license = "MIT",
+     keywords = "multiple-sequence-alignment  partial-order-graph-alignment",
+-    setup_requires=["cython<3"], # see https://github.com/cython/cython/issues/5568
++    setup_requires=["cython"], # see https://github.com/cython/cython/issues/5568
+     # Build instructions
+     ext_modules = [
+         Extension(
diff --git a/BioArchLinux/python-isal/PKGBUILD b/BioArchLinux/python-isal/PKGBUILD
index 6c0ea1ad94..5abf68191e 100644
--- a/BioArchLinux/python-isal/PKGBUILD
+++ b/BioArchLinux/python-isal/PKGBUILD
@@ -2,15 +2,16 @@
 
 pkgname=python-isal
 _module=${pkgname#python-}
-pkgver=1.6.1
-pkgrel=2
+pkgver=1.7.0
+pkgrel=1
 pkgdesc='Faster zlib and gzip compatible compression and decompression by providing python bindings for the ISA-L library'
 arch=('x86_64')
 url="https://github.com/pycompression/python-isal"
 license=('PSF')
-
-depends=('python' 'glibc')
-        
+depends=(
+         'python'
+         'glibc'
+        )
 makedepends=(
              'python-build'
              'python-installer'
@@ -20,10 +21,11 @@ makedepends=(
              'python-sphinx'
              'python-sphinx_rtd_theme'
              'python-sphinx-argparse'
+             'python-versioningit'
             )
 options=(!emptydirs)
 source=("https://files.pythonhosted.org/packages/source/${_module::1}/$_module/$_module-$pkgver.tar.gz")
-sha256sums=('7b64b75d260b544beea3f59cb25a6f520c04768818ef4ac316ee9a1f2ebf18f5')
+sha256sums=('9eb9457ed27fd0a8a7b403a5f4f9e6c8d1a44c2ca28ecd2f2bf3aed90b0a74bf')
 
 build() {
     cd "$_module-$pkgver"