add pymol

BioArchLinux/pymol/PKGBUILD

@@ -0,0 +1,44 @@
+# Maintainer: Lorenzo Gaifas <brisvag at gmail dot com>
+
+_name=pymol-open-source
+pkgname=pymol
+pkgver=2.5.0
+pkgrel=1
+pkgdesc="Molecular visualization system on an Open Source foundation"
+arch=('x86_64')
+url="https://pymol.org/"
+license=('custom')
+depends=('freetype2' 'glew' 'glm' 'glut' 'python-numpy' 'tcsh')
+makedepends=('desktop-file-utils' 'gendesk' 'libmmtf' 'msgpack-c' 'netcdf' 'git')
+optdepends=('python-pmw: pmw based UI'
+            'python-pyqt5: Qt5 based UI'
+			'ffmpeg: MPEG encoding')
+conflicts=('pymol')
+provides=("${_name}=${pkgver}")
+source=("https://github.com/schrodinger/pymol-open-source/archive/refs/tags/v${pkgver}.zip"
+	${pkgname}.png::"https://c.fsdn.com/allura/p/pymol/icon")
+md5sums=('233dec168414cff2d7ae89ae7d8fb875'
+         'a6b62ae41658a772f75b3b123a8e5c0b')
+
+prepare() {
+  # create desktop file
+  gendesk -f -n --pkgname "${_name}" --pkgdesc "${pkgdesc}" \
+          --name="PyMOL Molecular Graphics System" \
+          --categories="Science;Chemistry"
+
+  # suppress non-zero exit code that breaks makepkg
+  sed -i '/sys.exit/ s,2,0,' "${srcdir}/${_name}-${pkgver}/setup.py"
+}
+
+build() {
+  cd "${srcdir}/${_name}-${pkgver}"
+  python setup.py build
+}
+
+package() {
+  cd "${srcdir}/${_name}-${pkgver}"
+  python setup.py install --prefix=/usr --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+  install -Dm644 "${srcdir}/pymol.desktop" "${pkgdir}/usr/share/applications/pymol.desktop"
+  install -Dm644 "${srcdir}/pymol.png" "${pkgdir}/usr/share/pixmaps/pymol.png"
+}

BioArchLinux/pymol/lilac.py

@@ -0,0 +1,9 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_pkgbuild_commit()

BioArchLinux/pymol/lilac.yaml

@@ -0,0 +1,9 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+update_on:
+  - source: github
+    github: schrodinger/pymol-open-source
+    use_max_tag: true
+    prefix: 'v'

BioArchLinux/python-pmw/ChangeLog

@@ -0,0 +1,11 @@
+2.0.1-2:
+python3.5 rebuild
+
+2.0.1-1:
+upstream update
+
+2.0.0-2:
+rebuild according to FS#42100
+
+2.0.0-1:
+upstream update

BioArchLinux/python-pmw/LICENSE.txt

@@ -0,0 +1,21 @@
+Copyright (c) 2007,2008  David M. Cooke <david.m.cooke@gmail.com>
+Copyright (c) 2009,2010  Francesc Alted <faltet@pytables.org>
+Copyright (c) 2011-      See AUTHORS.txt
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

BioArchLinux/python-pmw/PKGBUILD

@@ -0,0 +1,29 @@
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: kfgz <kfgz at interia dot pl>
+# Contributor: Michael Krauss <hippodriver at gmx dot net>
+# Contributor: dsa
+
+pkgname=python-pmw
+pkgver=2.0.1
+pkgrel=6
+pkgdesc="A toolkit for high-level compound widgets in Python using the Tkinter module"
+arch=('any')
+url="http://pmw.sourceforge.net/"
+license=('MIT')
+depends=('python' 'tk')
+source=(${pkgname}-${pkgver}.tar.gz::https://pypi.python.org/packages/source/P/Pmw/Pmw-${pkgver}.tar.gz
+        "LICENSE.txt")
+md5sums=('8080b0fabc731ff236f97e88e13b3938'
+         '28b047a148c1780eddcf4bed6b150123')
+changelog="ChangeLog"
+
+build() {
+  cd "Pmw-${pkgver}"
+  python setup.py build
+}
+
+package() {
+  cd "Pmw-${pkgver}"
+  python setup.py install --prefix=/usr --root="${pkgdir}"
+  install -Dm644 "${srcdir}/LICENSE.txt" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}

BioArchLinux/python-pmw/lilac.py

@@ -0,0 +1,9 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+
+def post_build():
+  git_pkgbuild_commit()

BioArchLinux/python-pmw/lilac.yaml

@@ -0,0 +1,8 @@
+maintainers:
+  - github: starsareintherose
+    email: starsareintherose@outlook.com
+build_prefix: extra-x86_64
+update_on:
+  - source: regex
+    url: "https://pypi.org/project/Pmw/"
+    regex: 'Pmw (\d+.\d+.\d+)'