From c9bba3f298471e362565c99a759ce67cd5441a3b Mon Sep 17 00:00:00 2001 From: starsareintherose Date: Sun, 29 Aug 2021 17:37:51 +0800 Subject: [PATCH] add phylosuite --- phylosuite/PKGBUILD | 27 +++++++++++++++++++++++++++ phylosuite/PhyloSuite.desktop | 13 +++++++++++++ phylosuite/PhyloSuite.png | Bin 0 -> 5450 bytes phylosuite/lilac.py | 11 +++++++++++ phylosuite/lilac.yaml | 8 ++++++++ 5 files changed, 59 insertions(+) create mode 100644 phylosuite/PKGBUILD create mode 100644 phylosuite/PhyloSuite.desktop create mode 100755 phylosuite/PhyloSuite.png create mode 100644 phylosuite/lilac.py create mode 100644 phylosuite/lilac.yaml diff --git a/phylosuite/PKGBUILD b/phylosuite/PKGBUILD new file mode 100644 index 0000000000..b8a02956bc --- /dev/null +++ b/phylosuite/PKGBUILD @@ -0,0 +1,27 @@ +# Maintainer: malacology +# Contributor: malacology + +pkgname=phylosuite +pkgver=1.2.2 +pkgrel=1 +pkgdesc="an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies" +arch=('x86_64') +url="https://github.com/dongzhang0725/PhyloSuite" +license=('GPL3') +depends=( + 'python>=3.6' +) +source=("https://github.com/dongzhang0725/PhyloSuite/releases/download/${pkgver}/PhyloSuite_v${pkgver}_Linux.tar.gz" "PhyloSuite.desktop" "PhyloSuite.png") +md5sums=('9d43b3b2b9b076071f29f7c8f0689bd5' + '29b089eb8ab6a37d184f74cdfd21c569' + 'aca08e388f8d6a180a570b31ccebe764') + +package() { + install -dm755 "$pkgdir"/usr/{bin/phylosuite,share/applications} + mv "$srcdir"/PhyloSuite/* "$pkgdir"/usr/bin/phylosuite + chmod -R 755 "$pkgdir"/usr/bin/phylosuite + chmod +x "$pkgdir"/usr/bin/phylosuite + "$pkgdir"/usr/bin/phylosuite/PhyloSuite + install -m 755 "$srcdir"/PhyloSuite.png "$pkgdir"/usr/bin/phylosuite/ + install -m 755 "$srcdir"/PhyloSuite.desktop "$pkgdir"/usr/share/applications/ +} diff --git a/phylosuite/PhyloSuite.desktop b/phylosuite/PhyloSuite.desktop new file mode 100644 index 0000000000..99d1d99c18 --- /dev/null +++ b/phylosuite/PhyloSuite.desktop @@ -0,0 +1,13 @@ +PhyloSuite +[Desktop Entry] +Name=PhyloSuite +MimeType= +Exec=/usr/bin/phylosuite/PhyloSuite +Type=Application +Terminal=true +Icon=/usr/bin/phylosuite/PhyloSuite.png +Comment=PhyloSuite +X-KDE-StartupNotify=false +Categories=System; +X-GNOME-UsesNotifications=true% + diff --git a/phylosuite/PhyloSuite.png b/phylosuite/PhyloSuite.png new file mode 100755 index 0000000000000000000000000000000000000000..e77f60360ce49334b98ddbacb1eb97bb78da7253 GIT binary patch literal 5450 zcmV-Q6}9S#P)izfiY-^&WNK7I>X0iL?Z~uBKrVg&_N~Qf`T775)@}f1r&t&BuQ1T=}tl*`$E5!#6NiXS6r`~;g?cMe6`Q|_ORdsi|D_zxDAl&c!Q=Rwjx#yh!-Fxo2_3kZAJC@}K zuWDLYFiNzLI2HJ;7Siv)=WlSW8lRhh7Qg_aS@7SjKppDL$LDOw+zm{_->0dzxJ_>R zV^K=0RR5GAuxV8961XPU5CG)!{19w=83kUAw4xJEa;R9L1$D7x@f*hpIKni z)I}CeecPfb3r)JH#-uZ=4Ae0QbtTJ`%+uS4gv3g;^#a8S!l}BDurJf*1Zz$Q6c>$ z;2P)~3*Ez%4QvbB^pTd~BQ@=oA8E>{kQmQT5>NGw;bGARGBTfi+merL^!#vZ(%%!! 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