mv r-grohmm due to the upstream error

This commit is contained in:
Kuoi 2022-05-10 20:22:17 +01:00
parent b79e291f4f
commit bf4116c20a
3 changed files with 66 additions and 0 deletions

39
fail/r-grohmm/PKGBUILD Normal file
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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=groHMM
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=2
pkgdesc='GRO-seq Analysis Pipeline'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-iranges
r-rtracklayer
r-s4vectors
)
optdepends=(
r-biocstyle
r-edger
r-genomicfeatures
r-org.hs.eg.db
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('1a989a3b426bd792c19569720e2553d21a9e960c8a35bf38b6335fe25a1292c9')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:

12
fail/r-grohmm/lilac.py Normal file
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#!/usr/bin/env python3
from lilaclib import *
def pre_build():
for line in edit_file('PKGBUILD'):
if line.startswith('_pkgver='):
line = f'_pkgver={_G.newver}'
print(line)
update_pkgver_and_pkgrel(_G.newver.replace(':', '.').replace('-', '.'))
def post_build():
git_pkgbuild_commit()

15
fail/r-grohmm/lilac.yaml Normal file
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build_prefix: extra-x86_64
maintainers:
- github: starsareintherose
email: starsareintherose@outlook.com
repo_depends:
- r-genomeinfodb
- r-genomicalignments
- r-genomicranges
- r-iranges
- r-rtracklayer
- r-s4vectors
update_on:
- regex: groHMM_([\d._-]+).tar.gz
source: regex
url: https://bioconductor.org/packages/groHMM