diff --git a/BioArchLinux/r-scider/PKGBUILD b/BioArchLinux/r-scider/PKGBUILD new file mode 100644 index 0000000000..539a366822 --- /dev/null +++ b/BioArchLinux/r-scider/PKGBUILD @@ -0,0 +1,55 @@ +# Maintainer: Pekka Ristola + +_pkgname=scider +_pkgver=1.0.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Spatial cell-type inter-correlation by density in R" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL3) +depends=( + r-ggplot2 + r-igraph + r-isoband + r-janitor + r-knitr + r-lwgeom + r-pheatmap + r-plotly + r-rlang + r-s4vectors + r-sf + r-shiny + r-spatialexperiment + r-spatstat.explore + r-spatstat.geom + r-summarizedexperiment +) +checkdepends=( + r-edger + r-testthat +) +optdepends=( + r-edger + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('d20e0e846be7368da2613650b3834957') +sha256sums=('0b54660caa2f18fa624319f51f8971d29e067b56546f4bfd50cfb4dd5f8187e6') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} diff --git a/BioArchLinux/r-scider/lilac.py b/BioArchLinux/r-scider/lilac.py new file mode 100644 index 0000000000..c08ad6cea8 --- /dev/null +++ b/BioArchLinux/r-scider/lilac.py @@ -0,0 +1,17 @@ +#!/usr/bin/env python3 +from lilaclib import * + +import os +import sys +sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions')) +from lilac_r_utils import r_pre_build + +def pre_build(): + r_pre_build( + _G, + expect_license = "GPL-3 + file LICENSE", + ) + +def post_build(): + git_pkgbuild_commit() + update_aur_repo() diff --git a/BioArchLinux/r-scider/lilac.yaml b/BioArchLinux/r-scider/lilac.yaml new file mode 100644 index 0000000000..1003ee3ee3 --- /dev/null +++ b/BioArchLinux/r-scider/lilac.yaml @@ -0,0 +1,30 @@ +build_prefix: extra-x86_64 +maintainers: +- github: pekkarr + email: pekkarr@protonmail.com +repo_depends: +- r-ggplot2 +- r-igraph +- r-isoband +- r-janitor +- r-knitr +- r-lwgeom +- r-pheatmap +- r-plotly +- r-rlang +- r-s4vectors +- r-sf +- r-shiny +- r-spatialexperiment +- r-spatstat.explore +- r-spatstat.geom +- r-summarizedexperiment +repo_makedepends: +- r-edger +- r-testthat +update_on: +- source: rpkgs + pkgname: scider + repo: bioc + md5: true +- alias: r