From c09b841da99ae867dd2d3800014f3677419b7cc6 Mon Sep 17 00:00:00 2001
From: Kuoi <starsareintherose@outlook.com>
Date: Mon, 29 Aug 2022 02:50:59 +0100
Subject: [PATCH] raxml-light: init

---
 BioArchLinux/raxml-light/PKGBUILD   | 23 +++++++++++++++++++++++
 BioArchLinux/raxml-light/lilac.py   | 12 ++++++++++++
 BioArchLinux/raxml-light/lilac.yaml |  8 ++++++++
 3 files changed, 43 insertions(+)
 create mode 100644 BioArchLinux/raxml-light/PKGBUILD
 create mode 100644 BioArchLinux/raxml-light/lilac.py
 create mode 100644 BioArchLinux/raxml-light/lilac.yaml

diff --git a/BioArchLinux/raxml-light/PKGBUILD b/BioArchLinux/raxml-light/PKGBUILD
new file mode 100644
index 0000000000..a3dbc10fce
--- /dev/null
+++ b/BioArchLinux/raxml-light/PKGBUILD
@@ -0,0 +1,23 @@
+pkgname=raxml-light
+_pkgname=RAxML-Light
+pkgver=1.0.9
+pkgrel=1
+pkgdesc="A tool for computing terabyte phylogenies https://doi.org/10.1093/bioinformatics/bts309"
+arch=('x86_64')
+url="https://cme.h-its.org/exelixis/web/software/raxml-light/index.html"
+depends=('gcc-libs')
+makedepends=('make' 'gcc')
+license=('unknow')
+source=("https://cme.h-its.org/exelixis/php/countRAxMLLight${pkgver//./}.php")
+md5sums=('a2740440b2d498a03bab88fbd6b7432a')
+
+build() {
+  cd "${_pkgname}-$pkgver"
+  make -f Makefile.AVX.gcc
+}
+
+package() {
+  cd "${_pkgname}-$pkgver"
+  install -Dm 755 raxmlLight-AVX $pkgdir/usr/bin/$pkgname
+}
+
diff --git a/BioArchLinux/raxml-light/lilac.py b/BioArchLinux/raxml-light/lilac.py
new file mode 100644
index 0000000000..c6d1de3db7
--- /dev/null
+++ b/BioArchLinux/raxml-light/lilac.py
@@ -0,0 +1,12 @@
+#!/usr/bin/env python3
+
+from lilaclib import *
+
+def pre_build():
+  update_pkgver_and_pkgrel(_G.newver.lstrip('v'))
+  run_cmd(['updpkgsums'])
+
+def post_build():
+  git_add_files('PKGBUILD')
+  git_commit()
+  update_aur_repo()
diff --git a/BioArchLinux/raxml-light/lilac.yaml b/BioArchLinux/raxml-light/lilac.yaml
new file mode 100644
index 0000000000..7c64cc1a76
--- /dev/null
+++ b/BioArchLinux/raxml-light/lilac.yaml
@@ -0,0 +1,8 @@
+build_prefix: extra-x86_64
+maintainers:
+  - github: starsareintherose
+    email: kuoi@bioarchlinux.org
+update_on:
+  - regex: 'RAxML-Light v1(\d+.\d+.\d+) available here'
+    source: regex
+    url: https://cme.h-its.org/exelixis/web/software/raxml-light/index.html