r-rpostgres: init, checkdependency of r-sf

BioArchLinux/r-rpostgres/PKGBUILD

@@ -0,0 +1,77 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+# Contributor: peippo <christoph+aur@christophfink.com>
+
+_pkgname=RPostgres
+_pkgver=1.4.5
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Rcpp Interface to PostgreSQL"
+arch=(x86_64)
+url="https://cran.r-project.org/package=${_pkgname}"
+license=(GPL3)
+depends=(
+  postgresql-libs
+  r-bit64
+  r-blob
+  r-dbi
+  r-hms
+  r-lubridate
+  r-rcpp
+  r-withr
+)
+makedepends=(
+  boost
+  r-plogr
+)
+checkdepends=(
+  postgresql
+  r-dbitest
+  r-testthat
+)
+optdepends=(
+  r-callr
+  r-covr
+  r-dbitest
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz"
+        "system-boost.patch")
+md5sums=('5b2cf8d6695f79f5bb0f365fdd63f825'
+         '77a2948b75606cdf00a4e6fa280c6ce9')
+sha256sums=('70ff848cba51ddad4642a20e01cda1033e6f218b015a13380c30604bbd18c797'
+            '760e6260eb765bb3414759a6aa56871457fdc73480c40419d6c01ae8d086bfb5')
+
+prepare() {
+  # use system boost library
+  patch -Np1 -i system-boost.patch
+}
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+
+  # create database for tests
+  export PGDATA=db
+  export PGHOST="$(pwd)/host"
+  mkdir host
+  initdb
+  pg_ctl -l postgres.log -o "-k ${PGHOST@Q}" start
+  createdb
+
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+
+  # shut down test database
+  pg_ctl stop
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}

BioArchLinux/r-rpostgres/lilac.py

@@ -0,0 +1,16 @@
+#!/usr/bin/env python3
+from lilaclib import *
+
+import os
+import sys
+sys.path.append(os.path.normpath(f'{__file__}/../../../lilac-extensions'))
+from lilac_r_utils import r_pre_build
+
+def pre_build():
+    r_pre_build(
+        _G,
+        expect_systemrequirements = "libpq >= 9.0: libpq-dev (deb) or postgresql-devel (rpm)",
+    )
+
+def post_build():
+    git_pkgbuild_commit()

BioArchLinux/r-rpostgres/lilac.yaml

@@ -0,0 +1,27 @@
+build_prefix: extra-x86_64
+maintainers:
+- github: pekkarr
+  email: pekkarr@protonmail.com
+repo_depends:
+- r-bit64
+- r-blob
+- r-dbi
+- r-hms
+- r-lubridate
+- r-rcpp
+- r-withr
+repo_makedepends:
+- r-plogr
+- r-dbitest
+- r-testthat
+update_on:
+- source: rpkgs
+  pkgname: RPostgres
+  repo: cran
+  md5: true
+- alias: r
+- source: alpm
+  alpm: postgresql-libs
+  repo: extra
+  provided: libpq.so
+  strip_release: true

BioArchLinux/r-rpostgres/system-boost.patch

@@ -0,0 +1,10 @@
+diff --git a/RPostgres/src/Makevars.in b/RPostgres/src/Makevars.in
+index 997f045..b606a3a 100644
+--- a/RPostgres/src/Makevars.in
++++ b/RPostgres/src/Makevars.in
+@@ -1,4 +1,4 @@
+-PKG_CPPFLAGS=@cflags@ -Ivendor -DRCPP_DEFAULT_INCLUDE_CALL=false -DRCPP_USING_UTF8_ERROR_STRING -DBOOST_NO_AUTO_PTR @plogr@
++PKG_CPPFLAGS=@cflags@ -DRCPP_DEFAULT_INCLUDE_CALL=false -DRCPP_USING_UTF8_ERROR_STRING -DBOOST_NO_AUTO_PTR @plogr@
+ 
+ PKG_CFLAGS=$(C_VISIBILITY)
+ PKG_CXXFLAGS=$(CXX_VISIBILITY)